View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_15 (Length: 539)
Name: NF11036_high_15
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 521
Target Start/End: Complemental strand, 13656620 - 13656098
Alignment:
| Q |
13 |
agcagagattgatttccctctcataaatgtaatgtat--cttcacatatttattactaccactattctatcttaatgtctcagtatatttgttctttcta |
110 |
Q |
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| T |
13656620 |
agcagagattgatttccctctcataaatgtaatgtatatcttcacatatttattactaccactattctatcttaatgtctcagtatatttgttctttcta |
13656521 |
T |
|
| Q |
111 |
gtttctagtgtaatgctttcccttttcctttctaatgttgatgcatttatttcttatggtgattgaaggaaacttaaagcaacgattttaagctgagaga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13656520 |
gtttctagtgtaatgctttcccttttcctttctaatgttgatgcatttatttcttatggtgattgaaggaaacttaaagcaactattttaagctgagaga |
13656421 |
T |
|
| Q |
211 |
attagactcacctctatatgaggggatgcatttatttttatggtt---------aattatgttgcaattcatacagactgtaagacaactgaactttata |
301 |
Q |
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| T |
13656420 |
attagactcacctctatatgaggggatgcatttatttttatggttaataatgtcaatgatgttgcaattcatacagactgtaagacaactgaactttata |
13656321 |
T |
|
| Q |
302 |
gttgcaacgtactttaaatataatcaaaagaataaattaaagttaacggttattaagagtaatagacaatttcctgtcagaaagaaagggtacatcgaca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656320 |
gttgcaacgtactttaaatataatcaaaagaataaattaaagttaacggttattaagagtaatagacaatttcctgtcagaaagaaagggtacatcgaca |
13656221 |
T |
|
| Q |
402 |
atttaatttaatcttactcta---nnnnnnnnnncaaattaattaaaagatgttctaaaccattatatataattgaactatttacttgtactttaaacca |
498 |
Q |
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| T |
13656220 |
atttaatttaatcttactctaattttttttttttcaaattaattaaaagatgttctaaaccattatatataattgaactatttacttgtactttaaacca |
13656121 |
T |
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| Q |
499 |
ttaaacttgttgataaaatacat |
521 |
Q |
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| T |
13656120 |
ttaaacttgttgataaaatacat |
13656098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 521
Target Start/End: Complemental strand, 13715262 - 13714740
Alignment:
| Q |
13 |
agcagagattgatttccctctcataaatgtaatgtat--cttcacatatttattactaccactattctatcttaatgtctcagtatatttgttctttcta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715262 |
agcagagattgatttccctctcataaatgtaatgtatatcttcacatatttattactaccactattctatcttaatgtctcagtatatttgttctttcta |
13715163 |
T |
|
| Q |
111 |
gtttctagtgtaatgctttcccttttcctttctaatgttgatgcatttatttcttatggtgattgaaggaaacttaaagcaacgattttaagctgagaga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13715162 |
gtttctagtgtaatgctttcccttttcctttctaatgttgatgcatttatttcttatggtgattgaaggaaacttaaagcaactattttaagctgagaga |
13715063 |
T |
|
| Q |
211 |
attagactcacctctatatgaggggatgcatttatttttatggtt---------aattatgttgcaattcatacagactgtaagacaactgaactttata |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715062 |
attagactcacctctatatgaggggatgcatttatttttatggttaataatgtcaatgatgttgcaattcatacagactgtaagacaactgaactttata |
13714963 |
T |
|
| Q |
302 |
gttgcaacgtactttaaatataatcaaaagaataaattaaagttaacggttattaagagtaatagacaatttcctgtcagaaagaaagggtacatcgaca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13714962 |
gttgcaacgtactttaaatataatcaaaagaataaattaaagttaacggttattaagagtaatagacaatttcctgtcagaaagaaagggtacatcgaca |
13714863 |
T |
|
| Q |
402 |
atttaatttaatcttactcta---nnnnnnnnnncaaattaattaaaagatgttctaaaccattatatataattgaactatttacttgtactttaaacca |
498 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13714862 |
atttaatttaatcttactctaattttttttttttcaaattaattaaaagatgttctaaaccattatatataattgaactatttacttgtactttaaacca |
13714763 |
T |
|
| Q |
499 |
ttaaacttgttgataaaatacat |
521 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
13714762 |
ttaaacttgttgataaaatacat |
13714740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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