View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_18 (Length: 500)
Name: NF11036_high_18
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 2313854 - 2313386
Alignment:
| Q |
17 |
gcttcagccacgatttgaactcaaatattcccaaatgtgaactacttgagcctagcctggacgaaaacttggttgtaaccaaggatgatccccattttgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2313854 |
gcttcagccacgatttgaactcaaatattcccaaatgtgat-tacttgagcctagcctggacgaaaacttggttgtaaccaaggatgatccccattttgc |
2313756 |
T |
|
| Q |
117 |
ttattcccttgttgcaataattttaggatatcttgcacgagtgctttttcatttggcattgaattttaaaggtaaaaccttttttctaaaccatgagttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2313755 |
ttattcccttgttgcaataattttaggatatcttgcacgagtgctttttcatttggcattgaattttaaaggtaaaaccttttttctaaaccatgagttc |
2313656 |
T |
|
| Q |
217 |
ttgatttcttgttctgaaaaaggaaggtgttaattgcattatatcttactgtattcctgtagtagaagtccaagtagcagcagcatattcagtgcatgtt |
316 |
Q |
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| T |
2313655 |
ttgatttcttgttctgaaaaaggaaggtgttaattgcattatatcttactgtattcctgtagtagaagtccaagtagcagcagcatattcagtgcatgtt |
2313556 |
T |
|
| Q |
317 |
cccttattaacaccattgctagttgtttgaacgccagattaatgagtgcaagatggaagagtaacacaaagtctcattggatagaactagtgttgtagga |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2313555 |
cccttattaacaccattgctagttgtttgaacaccagattaatgagtgcaagatggaagagtaacacaaagtctcattggatagaactagtgttgtagga |
2313456 |
T |
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| Q |
417 |
attgaaagaatgtttcacataggagagaaaatacttttgtgaatgcagtgagcgctcaagaaaatatatt |
486 |
Q |
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| T |
2313455 |
attgaaagaatgtttcacataggagagaaaacacttttgtgaatgcagtgagcgctcaagaaaatatatt |
2313386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 2323598 - 2323162
Alignment:
| Q |
17 |
gcttcagccacgatttgaactcaaatattcccaaatgtgaactacttgagcctagcctggacgaaaacttggttgtaaccaaggatgatccccattttgc |
116 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||| || || ||||| |||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
2323598 |
gcttcagccaagatttgaactcaaatattcccaagtgtggaccacatgagcaaagcctggacgaaaactaggttgtaaccaaggatgatccccatgttgt |
2323499 |
T |
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| Q |
117 |
ttattcccttgttgcaataattttaggatatcttgcacgagtgctttttcatttggcattgaattttaaaggtaaaaccttttttctaaaccatgagttc |
216 |
Q |
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| T |
2323498 |
ttattcccttgttgcaataattttaggatatcttgcacgagtgctttttcatttggcattgatttttaaaggtaaaaccttttttctaaaccatgagttc |
2323399 |
T |
|
| Q |
217 |
ttgatttcttgttctgaaaaaggaaggtgttaattgcatt----atatcttactgtattcctgtagtagaagtccaagtagcagcagcatattcagtgca |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
2323398 |
ttgacttcttgttctgaaaaaggaaggtgttaattgcattatatatatcttactgtattcccgtagtagaagtgcaagtagcagcagcaccttcagtgca |
2323299 |
T |
|
| Q |
313 |
tgttccctt------attaacaccattgctagttgtttgaacgccagattaatgagtgcaagatggaagagt-aacacaaagtctcattggatagaacta |
405 |
Q |
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|||||||| ||||||||||||||||| |||| |||| | || | ||||| || ||| || |||| | |||||||| || ||||||||||||| | |
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| T |
2323298 |
cgttcccttacttccattaacaccattgctagatgttggaacactagttaaatgaatggaagttgaaagaataaacacaaactcccattggatagaacaa |
2323199 |
T |
|
| Q |
406 |
gtgttgtaggaattgaaagaatgtttcacataggaga |
442 |
Q |
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||||||| ||||||||| ||||| |||||||||| |
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| T |
2323198 |
gtgttgtgtgaattgaaaaaatgtcctacataggaga |
2323162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 2336592 - 2336327
Alignment:
| Q |
28 |
gatttgaactcaaatattcccaaatgtgaactacttgagcctagcc-------tggacgaaaacttggt-tgtaaccaaggatgatccccattttgctta |
119 |
Q |
| |
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||||||||||||||| ||||| ||||||||| ||||||||| |||| |||||||||| | ||| ||||||||| |||| ||||| ||| ||| |
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| T |
2336592 |
gatttgaactcaaatgttcccgaatgtgaaccacttgagccgagccatttagttggacgaaaaataggtctgtaaccaaatatgaaccccaggttgttta |
2336493 |
T |
|
| Q |
120 |
ttcccttgttgcaataattttaggatatcttgcacgagtgctttttcatttggcattgaattttaaaggtaaaaccttttttctaaaccatga------- |
212 |
Q |
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| T |
2336492 |
t-cccttattgcaataatttaaggatatcttgcatgagtgctttttcatttctca-tcaattttaaaggtaaagcctttttactaaaccatgacaacacc |
2336395 |
T |
|
| Q |
213 |
----gttcttgatttcttgttctgaaaaaggaaggtgttaattgcattatatcttactgtattcctgta |
277 |
Q |
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| T |
2336394 |
ctatgttcttgatttcttgtt-tgagaaaagaaggcgttaattgcattatatcttactgtattcctgta |
2336327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 2343803 - 2343742
Alignment:
| Q |
257 |
atatcttactgtattcctgtagtagaagtccaagtagcagcagcatattcagtgcatgttcc |
318 |
Q |
| |
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| T |
2343803 |
atatcttactgtattcctgtagcagaagtgcaagtagcagcagcaccttcagtgcatgttcc |
2343742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 2306990 - 2306944
Alignment:
| Q |
401 |
aactagtgttgtaggaattgaaagaatgtttcacataggagagaaaa |
447 |
Q |
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| T |
2306990 |
aactagtgttgtgtgaattgaaaaaatgtttcatataggagagaaaa |
2306944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 27800667 - 27800719
Alignment:
| Q |
352 |
agattaatgagtgcaagatggaagagtaa-cacaaagtctcattggatagaac |
403 |
Q |
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|||| |||||||| ||| ||||||||||| ||||||||||||||||||||||| |
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| T |
27800667 |
agataaatgagtggaagttggaagagtaaacacaaagtctcattggatagaac |
27800719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 25688582 - 25688615
Alignment:
| Q |
379 |
aacacaaagtctcattggatagaactagtgttgt |
412 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
25688582 |
aacacaaagtctcattggatagatctagtgttgt |
25688615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 42157243 - 42157307
Alignment:
| Q |
379 |
aacacaaagtctcattggatagaactagtgttgtaggaattgaaagaatgtttcacataggagag |
443 |
Q |
| |
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||||||||||| |||| ||||||||||| ||| | ||||||||| ||||| |||||||||||| |
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|
| T |
42157243 |
aacacaaagtcccattagatagaactagagttatgtgaattgaaaaaatgtcccacataggagag |
42157307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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