View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_19 (Length: 496)
Name: NF11036_high_19
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 3428028 - 3428478
Alignment:
| Q |
17 |
aagtatgttgcaatgtgtcacacacttctattttataactcatgctccacattattcactacaaatcttccgatgtgggacttatattatgacattctaa |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
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| T |
3428028 |
aagtatgctgcaatgtgtcacacacttctattttataactcatgctccacattattcactataaatcttccgatgtgggacttttattattacattctaa |
3428127 |
T |
|
| Q |
117 |
acaccattcaagtgtcagcagttcataccctagctcacacatttgctactccattagatccaaatagacagagcatgtttaatcatattgcagttgttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
3428128 |
acaccattcaagtgtcagcagttcataccctagctcacacatttgccactccattagatccaaatagacaaagtatgtttaatcatattgcagttgttga |
3428227 |
T |
|
| Q |
217 |
atccgatattttttgttgaactgataatatgcgttacaaaggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428228 |
atccgatattttttgttgaactgataatatgcgttacaaaggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtc |
3428327 |
T |
|
| Q |
317 |
ttactcaaaaagctcttgcagaaaccaattaaggaatgtttttgctccttgatctcctaactttccctctattttctatttttctagaacagttatgtat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3428328 |
ttactcaaaaagctcttgcagaaaccaattaaggaatgtttttgctccttgatctcctaactttccctatattttctatttttctagaacagttatgtat |
3428427 |
T |
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| Q |
417 |
atcatgtaaggaaaccttttctagtgccattactatacctatttttacttt |
467 |
Q |
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| T |
3428428 |
atcatgtaaggaaaccttttctagtgccattactatacctatttttacttt |
3428478 |
T |
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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 9211523 - 9211606
Alignment:
| Q |
17 |
aagtatgttgcaatgtgtcacacacttctattttataactcatgctccacattattcactacaaatcttccgatgtgggactta |
100 |
Q |
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||||||||| |||||| ||||||| |||| ||||||||||||||||||| | |||||||| ||| |||||||||||||||||| |
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| T |
9211523 |
aagtatgttacaatgtatcacacaattctgttttataactcatgctccataacattcactataaaacttccgatgtgggactta |
9211606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 9369962 - 9369879
Alignment:
| Q |
17 |
aagtatgttgcaatgtgtcacacacttctattttataactcatgctccacattattcactacaaatcttccgatgtgggactta |
100 |
Q |
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||||||||||||||| ||||||| |||| ||||||||||||||||||| | |||||||| ||| |||||||||||||||||| |
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| T |
9369962 |
aagtatgttgcaatgaatcacacaattctcttttataactcatgctccataacattcactataaaacttccgatgtgggactta |
9369879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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