View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_high_22 (Length: 460)
Name: NF11036_high_22
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_22 |
 | |
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| [»] chr4 (3 HSPs) |
| |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 23588276 - 23588735
Alignment:
| Q |
1 |
tgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaagtgtcatgactgtattgattcctagaaacacaaccattcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588276 |
tgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaacacaaccattcc |
23588375 |
T |
|
| Q |
101 |
taccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattcaagtctatgaaggcgaaagaacaaggactcgtgataacaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588376 |
taccaagaaggagcaagtgttttcaacctactctgataatcaacctggtgtgttgattcaagtctatgaaggcgaaagaacaaggactcgtgataacaat |
23588475 |
T |
|
| Q |
201 |
ttgttgggcaagtttgagttgtcgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttgacattgatgccaatggcattttgaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23588476 |
ttgttgggcaagtttgagttgtcgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttgacattgatgccaatggcattttgaatg |
23588575 |
T |
|
| Q |
301 |
tctcagcagaggacaagacaacagggcagaaaaacaagattacaatcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcagga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588576 |
tctcagcagaggacaagacaacagggcagaaaaacaagattacaatcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcagga |
23588675 |
T |
|
| Q |
401 |
agctgaaaagtacaagtctgaggacgaggagcacaaaaagaaagtggaggccaagaatgc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588676 |
agctgaaaagtacaagtctgaggacgaggagcacaaaaagaaagtggaggccaagaatgc |
23588735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 3 - 460
Target Start/End: Original strand, 23597130 - 23597587
Alignment:
| Q |
3 |
caggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaagtgtcatgactgtattgattcctagaaacacaaccattccta |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||| || ||||| ||||||||||| ||||||| |
|
|
| T |
23597130 |
caggatcttttgttgctggatgttactcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaacacaacaattccta |
23597229 |
T |
|
| Q |
103 |
ccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattcaagtctatgaaggcgaaagaacaaggactcgtgataacaattt |
202 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23597230 |
ccaagaaggagcaggtgttttcgacctattctgataaccaacctggtgtgctgattcaggtctacgaaggagaaagaacaaggactcgtgataacaattt |
23597329 |
T |
|
| Q |
203 |
gttgggcaagtttgagttgtcgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttgacattgatgccaatggcattttgaatgtc |
302 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23597330 |
gttgggcaagtttgagctgtcgggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaatgtc |
23597429 |
T |
|
| Q |
303 |
tcagcagaggacaagacaacagggcagaaaaacaagattacaatcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcaggaag |
402 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |
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|
| T |
23597430 |
tcagcagaggacaagacaaccgggcaaaaaaacaagattacaattaccaatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaag |
23597529 |
T |
|
| Q |
403 |
ctgaaaagtacaagtctgaggacgaggagcacaaaaagaaagtggaggccaagaatgc |
460 |
Q |
| |
|
| ||||||||||| || ||||| ||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
23597530 |
cggaaaagtacaaatccgaggatgaggagcacaaaaggaaggtggaggccaaaaatgc |
23597587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 458
Target Start/End: Complemental strand, 54395974 - 54395591
Alignment:
| Q |
75 |
ttgattcctagaaacacaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattcaagtctatgaaggcg |
174 |
Q |
| |
|
|||||||| || ||||| || |||||||| ||||||||||| | || ||||| ||||| ||||||||||||||||| ||||||||||| | |||||| | |
|
|
| T |
54395974 |
ttgattccaaggaacacgacgattcctacgaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaaggtg |
54395875 |
T |
|
| Q |
175 |
aaagaacaaggactcgtgataacaat-ttgttgggcaagtttgagttgtcgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttg |
273 |
Q |
| |
|
|| | |||| || ||||| ||| || ||||| || ||||| | | ||||| |||||||||||||| ||||| || ||||||| ||| || || | |
|
|
| T |
54395874 |
aacgtgcaagaacaaaggataataatcttcttggg-aaatttgaactcactggtattcctcctgctccaagaggtgtaccacagatcaatgtttgtttcg |
54395776 |
T |
|
| Q |
274 |
acattgatgccaatggcattttgaatgtctcagcagaggacaagacaacagggcagaaaaacaagattacaatcaccaatgacaagggtaggctctccaa |
373 |
Q |
| |
|
|||||||||| ||||| || ||||| || || || || || || ||| | || ||| |||||||| || ||||| ||||| ||||| ||| | ||| |
|
|
| T |
54395775 |
acattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaa |
54395676 |
T |
|
| Q |
374 |
ggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgaggacgaggagcacaaaaagaaagtggaggccaagaat |
458 |
Q |
| |
|
|||||| || |||||||||||| | || || || ||||| ||| | ||||| || ||| || |||||||||||||| |||||| |
|
|
| T |
54395675 |
ggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggatgaagaggtgaagaagaaagtggaggcgaagaat |
54395591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 61 - 460
Target Start/End: Original strand, 8018016 - 8018415
Alignment:
| Q |
61 |
gtgtcatgactgtattgattcctagaaacacaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattca |
160 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| || ||||| ||||||||||||||||| || || || ||||| ||||||||||||||||||||||| || |
|
|
| T |
8018016 |
gtgtcatgactgtattaattccaaggaacaccacaattccaaccaagaaggagcaagttttctctacttactcagataaccaacctggtgtgttgatcca |
8018115 |
T |
|
| Q |
161 |
agtctatgaaggcgaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgtcgggtatccctcctgctccaaggggtgttcctcagatc |
260 |
Q |
| |
|
||| |||||||| || ||| |||| || | || ||||| |||||||| || || ||| | || || || ||||| || || | ||||||||||| ||| |
|
|
| T |
8018116 |
agtttatgaaggtgagagagcaagaaccagagacaacaacttgttgggaaaattcgagctttctggcattcctccagcaccccgtggtgttcctcaaatc |
8018215 |
T |
|
| Q |
261 |
actgtctgctttgacattgatgccaatggcattttgaatgtctcagcagaggacaagacaacagggcagaaaaacaagattacaatcaccaatgacaagg |
360 |
Q |
| |
|
|| || ||||| ||||||||||||||||| || ||||||||||| || |||||||| ||||| |||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
8018216 |
acagtttgcttcgacattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaactgggcagaagaacaagattaccatcaccaatgacaaag |
8018315 |
T |
|
| Q |
361 |
gtaggctctccaaggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgaggacgaggagcacaaaaagaaagtggaggccaagaatgc |
460 |
Q |
| |
|
||||| | || ||||||||||||||||||||||| ||||||| ||||| |||||| |||| |||||||| ||||||||||| || || || |||||||| |
|
|
| T |
8018316 |
gtaggttgtctaaggaagaaattgagaagatggttgaggaagcagaaaaatacaaggctgaagacgaggaacacaaaaagaaggttgatgcaaagaatgc |
8018415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 42 - 457
Target Start/End: Complemental strand, 8102251 - 8101836
Alignment:
| Q |
42 |
ggtttggagaccgcaggaagtgtcatgactgtattgattcctagaaacacaaccattcctaccaagaaggagcaagtgttttcaacctactctgataacc |
141 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || || || || || || |||| |
|
|
| T |
8102251 |
ggtttggagactgcaggaggtgtcatgactgtattgattccaaggaacactaccattccaaccaagaaggagcaagttttctctacgtattcagacaacc |
8102152 |
T |
|
| Q |
142 |
aacctggtgtgttgattcaagtctatgaaggcgaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgtcgggtatccctcctgctcc |
241 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| || ||||| || || |||||||| |||||||| ||||||||| | || || || ||||| || || |
|
|
| T |
8102151 |
aacctggtgttttgatccaagtttatgaaggtgagagaaccagaaccaaggataacaacttgttgggtaagtttgagctttccggaattcctccagcacc |
8102052 |
T |
|
| Q |
242 |
aaggggtgttcctcagatcactgtctgctttgacattgatgccaatggcattttgaatgtctcagcagaggacaagacaacagggcagaaaaacaagatt |
341 |
Q |
| |
|
| |||||||||||||||||||| || ||||| |||||||||||||| || ||||||||||| || |||||||| ||||| |||||||| ||||||||| |
|
|
| T |
8102051 |
ccgcggtgttcctcagatcactgtttgttttgatattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaaccgggcagaagaacaagatt |
8101952 |
T |
|
| Q |
342 |
acaatcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgaggacgaggagcacaaaaaga |
441 |
Q |
| |
|
|| |||||||| || ||||| ||| | || ||||||||||| ||||||||||| || ||||| || || |||||| ||| || ||||||||||| |||| |
|
|
| T |
8101951 |
accatcaccaacgataagggaaggttgtcaaaggaagaaatcgagaagatggtccaagaagcagagaaatacaagagtgaagatgaggagcacaagaaga |
8101852 |
T |
|
| Q |
442 |
aagtggaggccaagaa |
457 |
Q |
| |
|
| || ||||| ||||| |
|
|
| T |
8101851 |
aggttgaggcaaagaa |
8101836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 39985253 - 39984812
Alignment:
| Q |
19 |
tggatgttactcctctctcccttggtttggagaccgcaggaagtgtcatgactgtattgattcctagaaacacaaccattcctaccaagaaggagcaagt |
118 |
Q |
| |
|
||||||| || ||||| || |||||||||||||| || || |||| |||||||| | || || || || || || ||||| || ||||| || || || |
|
|
| T |
39985253 |
tggatgtcacccctctatctcttggtttggagactgctggtggtgtgatgactgtgcttatcccaaggaataccactattccaacaaagaaagaacaggt |
39985154 |
T |
|
| Q |
119 |
gttttcaacctactctgataaccaacctggtgtgttgattcaagtctatgaaggcgaaagaacaaggactcgtgataacaatttgttgggcaagtttgag |
218 |
Q |
| |
|
|| || || || ||||| ||||| ||||| |||||||| ||||| | |||||| || || ||||| || | || ||||||||||||||||||||||| |
|
|
| T |
39985153 |
tttctctacatattctgacaaccagcctggcgtgttgatccaagtttttgaaggagagaggacaagaacaagagacaacaatttgttgggcaagtttgaa |
39985054 |
T |
|
| Q |
219 |
ttgtcgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttgacattgatgccaatggcattttgaatgtctcagcagaggacaaga |
318 |
Q |
| |
|
| || || || |||||||| || || |||||||| || |||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| | |
|
|
| T |
39985053 |
ctttccggcattcctcctgcccccagaggtgttccccaaatcactgtgtgctttgacattgatgccaatggtatcttgaatgtctctgcagaagacaaaa |
39984954 |
T |
|
| Q |
319 |
caacagggcagaaaaacaagattacaatcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtc |
418 |
Q |
| |
|
|||| || ||||| ||||| || || |||||||||||||||||||| || || |||||||| |||||||||||||| || || || || ||||||||||| |
|
|
| T |
39984953 |
caactggccagaagaacaaaatcaccatcaccaatgacaagggtagactttcaaaggaagacattgagaagatggttcaagaggcagagaagtacaagtc |
39984854 |
T |
|
| Q |
419 |
tgaggacgaggagcacaaaaagaaagtggaggccaagaatgc |
460 |
Q |
| |
|
|| || || ||||| || ||||| || |||||||||||||| |
|
|
| T |
39984853 |
ggaagatgaagagcataagaagaaggtcgaggccaagaatgc |
39984812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 303
Target Start/End: Original strand, 17706340 - 17706520
Alignment:
| Q |
123 |
tcaacctactctgataaccaacctggtgtgttgattcaagtctatgaaggcgaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgt |
222 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||||||| |||||| |||||| || ||||||| | | ||||||||||||||||| || ||| | | | |
|
|
| T |
17706340 |
tcaacctattctgacaaccagtctgatttgttgatcaaagtctttgaaggagagggaacaagaattaaagataacaatttgttgggaaaatttcaacttt |
17706439 |
T |
|
| Q |
223 |
cgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttgacattgatgccaatggcattttgaatgtct |
303 |
Q |
| |
|
| || |||||||||||||| |||||||||| ||||||| ||| ||||||||||||||| | ||||| || |||||||||| |
|
|
| T |
17706440 |
ccggcatccctcctgctccttggggtgttccacagatcattgtatgctttgacattgatcctaatggtatattgaatgtct |
17706520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 17648662 - 17648773
Alignment:
| Q |
192 |
gataacaatttgttgggcaagtttgagttgtcgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttgacattgatgccaatggca |
291 |
Q |
| |
|
||||||||||||||||| || ||| | | || || |||||||||||||| || |||||||| ||||||| ||| ||||||||||||||||| ||||| | |
|
|
| T |
17648662 |
gataacaatttgttgggaaaatttcaactttccggcatccctcctgctcctagaggtgttccacagatcagtgtatgctttgacattgatgctaatggta |
17648761 |
T |
|
| Q |
292 |
ttttgaatgtct |
303 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
17648762 |
tattggatgtct |
17648773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 17649198 - 17649277
Alignment:
| Q |
339 |
attacaatcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtc |
418 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||||| | |||||||||||||| | || || || ||||||||||| |
|
|
| T |
17649198 |
attaccatcaccaatgacaagggtagactttcaaaggaaaacattgagaagatggttcgagaggcagagaagtacaagtc |
17649277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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