View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_high_23 (Length: 453)

Name: NF11036_high_23
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_high_23
NF11036_high_23
[»] chr7 (12 HSPs)
chr7 (19-123)||(35791046-35791144)
chr7 (19-124)||(31319776-31319875)
chr7 (197-270)||(6726046-6726120)
chr7 (198-270)||(1321173-1321246)
chr7 (19-93)||(5783349-5783423)
chr7 (197-264)||(33719345-33719413)
chr7 (197-270)||(44755947-44756021)
chr7 (221-268)||(47456703-47456749)
chr7 (197-270)||(24324425-24324499)
chr7 (186-264)||(42532892-42532971)
chr7 (199-264)||(48058306-48058371)
chr7 (226-270)||(43235720-43235764)
[»] chr5 (11 HSPs)
chr5 (19-125)||(1919014-1919114)
chr5 (197-270)||(26405175-26405249)
chr5 (19-87)||(8283625-8283693)
chr5 (41-121)||(19572843-19572922)
chr5 (186-265)||(25992370-25992450)
chr5 (188-261)||(5187313-5187387)
chr5 (204-270)||(7194928-7194995)
chr5 (200-270)||(8297853-8297924)
chr5 (200-268)||(7391626-7391695)
chr5 (19-60)||(19572629-19572670)
chr5 (186-270)||(26045590-26045675)
[»] chr3 (13 HSPs)
chr3 (19-122)||(23515985-23516083)
chr3 (201-270)||(33143579-33143649)
chr3 (197-270)||(37123750-37123824)
chr3 (221-270)||(46358009-46358058)
chr3 (218-270)||(32010189-32010241)
chr3 (197-270)||(14893310-14893384)
chr3 (200-265)||(28937360-28937426)
chr3 (197-270)||(50518716-50518790)
chr3 (197-269)||(48892981-48893054)
chr3 (221-265)||(823029-823073)
chr3 (197-268)||(4171124-4171196)
chr3 (200-264)||(14280182-14280247)
chr3 (197-265)||(25648063-25648132)
[»] scaffold0127 (1 HSPs)
scaffold0127 (19-93)||(23536-23610)
[»] chr6 (5 HSPs)
chr6 (19-93)||(20968965-20969039)
chr6 (197-270)||(3880239-3880313)
chr6 (19-82)||(9960355-9960418)
chr6 (197-266)||(20701429-20701498)
chr6 (19-123)||(2480707-2480806)
[»] chr1 (16 HSPs)
chr1 (197-270)||(11439647-11439721)
chr1 (20-122)||(34540847-34540947)
chr1 (19-93)||(32824269-32824343)
chr1 (186-270)||(4431044-4431129)
chr1 (197-270)||(7451888-7451962)
chr1 (221-270)||(9312967-9313016)
chr1 (227-270)||(9557319-9557362)
chr1 (197-270)||(27102562-27102636)
chr1 (19-122)||(44681632-44681729)
chr1 (197-265)||(46768557-46768626)
chr1 (231-270)||(27905846-27905885)
chr1 (28-82)||(8123782-8123836)
chr1 (226-270)||(16577674-16577718)
chr1 (226-270)||(32882773-32882817)
chr1 (230-270)||(34159057-34159097)
chr1 (201-253)||(52278665-52278717)
[»] chr8 (3 HSPs)
chr8 (19-82)||(7940225-7940288)
chr8 (227-265)||(22325734-22325772)
chr8 (226-270)||(8862251-8862295)
[»] chr2 (15 HSPs)
chr2 (18-93)||(36599517-36599592)
chr2 (19-122)||(2280453-2280548)
chr2 (200-270)||(41086431-41086502)
chr2 (197-270)||(7696341-7696415)
chr2 (197-270)||(33533371-33533445)
chr2 (197-270)||(42802466-42802540)
chr2 (197-264)||(34230581-34230648)
chr2 (199-270)||(4975127-4975199)
chr2 (199-270)||(4993035-4993107)
chr2 (199-270)||(37559838-37559910)
chr2 (236-270)||(29139579-29139613)
chr2 (197-270)||(29997325-29997399)
chr2 (221-270)||(29487505-29487553)
chr2 (218-270)||(10173206-10173258)
chr2 (295-375)||(26742644-26742724)
[»] chr4 (16 HSPs)
chr4 (19-82)||(7575623-7575686)
chr4 (197-270)||(41117595-41117669)
chr4 (19-82)||(43005507-43005570)
chr4 (19-123)||(27109017-27109115)
chr4 (186-270)||(9262812-9262897)
chr4 (197-268)||(42719536-42719608)
chr4 (19-93)||(12633315-12633389)
chr4 (221-265)||(19814849-19814893)
chr4 (35-91)||(25163868-25163924)
chr4 (197-270)||(16832646-16832721)
chr4 (210-264)||(39419298-39419352)
chr4 (197-269)||(2061460-2061533)
chr4 (197-245)||(22810825-22810874)
chr4 (186-270)||(38636861-38636946)
chr4 (198-270)||(52009206-52009279)
chr4 (197-240)||(48098686-48098730)
[»] scaffold0050 (1 HSPs)
scaffold0050 (197-270)||(37087-37161)
[»] scaffold1384 (1 HSPs)
scaffold1384 (226-270)||(1286-1330)


Alignment Details
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 35791144 - 35791046
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||      |||||||||||||||||||||||||    
T  35791144 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttaaccag------tgccccaggggcactggatagcatt 35791051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 31319875 - 31319776
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||      |||||||||||||||||||||||||    
T  31319875 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattatttttattgttccttaaccag------tgccccaggggcactggatagcatt 31319782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 6726120 - 6726046
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6726120 ttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 6726046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 1321173 - 1321246
Alignment:
Q  198 tgtttgtattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  1321173 tgtttgtattctcagtttcatcgatctccgttcgtcttgagtagagatgtggttgtttaataaaatttgttgtt 1321246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 5783349 - 5783423
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccc 93  Q
    |||||||| ||||| ||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  5783349 ttgaccaacttttcactttaattaaaataaattaagtggaatcaattaattttattgttccttaaccagtgcccc 5783423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 33719345 - 33719413
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaattt 264  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||    
T  33719345 ttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 44755947 - 44756021
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||| || | |||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||||    
T  44755947 ttgtttgtatgcttagtttcactgatcttcgttcgtcttgagcagggatctagttgtttaataaaatttgttgtt 44756021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 47456749 - 47456703
Alignment:
Q  221 tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttg 268  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  47456749 tctctgttcgtcttgagcagagatctggtt-tttaataaaatttgttg 47456703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 24324499 - 24324425
Alignment:
Q  197 ttgtttgtattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| ||||| |||||||  ||||||||||||| | || |  ||||||||||||||||||||||    
T  24324499 ttgtttgtattctcactttcatcgatctctattcgtcttgagcaaatatataattgtttaataaaatttgttgtt 24324425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 42532971 - 42532892
Alignment:
Q  186 tacggcgcatgttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaattt 264  Q
    |||||||| | ||| ||||||||||| || ||| | |||| ||||||||||||||| ||| ||||||| |||||||||||    
T  42532971 tacggcgccttttggttgtattctcagttccaccggtctctgttcgtcttgagcagggatttggttgtctaataaaattt 42532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 48058371 - 48058306
Alignment:
Q  199 gtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaattt 264  Q
    |||||||||||| ||||||| | |||| ||| ||||||||||||||| ||||| |||||||||||||    
T  48058371 gtttgtattctctatttcaccggtctctgtttgtcttgagcagagatatggtt-tttaataaaattt 48058306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 43235720 - 43235764
Alignment:
Q  226 gttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||||| ||  |||||||| |||||||||||||||||||    
T  43235720 gttcgtcttgagtaggaatctggttctttaataaaatttgttgtt 43235764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 1919114 - 1919014
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcatt 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||      |||||||||||||||||||||||||    
T  1919114 ttgaccaatttttccctttaattaaagtaaattaaatggaactaattaattttattgttccttaaccag------tgccccaggggcactggatagcatt 1919021  T
Q  119 acccttt 125  Q
    |||||||    
T  1919020 acccttt 1919014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 26405249 - 26405175
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| |||||| | |||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  26405249 ttgtttgtattctcagtttcaccggtctttgttcgtcttgagcagaaatctggttgtttaataaaatttgttgtt 26405175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 8283625 - 8283693
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccag 87  Q
    |||| ||| ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||    
T  8283625 ttgatcaacttttcactttaattaaagtaaattaagtggaatcaattaattttattgttccttaaccag 8283693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 19572843 - 19572922
Alignment:
Q  41 taaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcattacc 121  Q
    |||| ||||||||||||||  ||||| ||||||||||||||| ||||||||||||   |||||||||||||||||||||||    
T  19572843 taaaataaattaagtggaatcaattatttttattgttccttaaccagtgcccctg-ggcaggggcactggatagcattacc 19572922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 25992370 - 25992450
Alignment:
Q  186 tacggcgcatgttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttg 265  Q
    |||||||| | ||||||||||| ||| |||||| | |||| |||||||||||||||||||||||||||||||||| |||||    
T  25992370 tacggcgccttttgtttgtattatcattttcaccggtctctgttcgtcttgagcagagatctggttgtttaataatatttg 25992450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 5187313 - 5187387
Alignment:
Q  188 cggcgcatgttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaa 261  Q
    |||||| | |||||||||||||||||||||| |||||| | || |||||||||||||| | ||||||||||||||    
T  5187313 cggcgccttttgtttgtattctcaatttcaccgatctctgctcttcttgagcagagatttagttgtttaataaaa 5187387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 7194995 - 7194928
Alignment:
Q  204 tattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||| ||||| ||||||  |||||||||||| || |||||||||||||||||||||||| ||||    
T  7194995 tattctcagtttcatcgatctttgttcgtcttgagtagggatctggttgtttaataaaatttgctgtt 7194928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 8297853 - 8297924
Alignment:
Q  200 tttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||||| |||||| | |||| |||||||||||| ||||||||| ||||| ||||||||||| ||||    
T  8297853 tttgtattctcagtttcaccggtctctgttcgtcttgagtagagatctgattgttcaataaaatttgctgtt 8297924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 7391695 - 7391626
Alignment:
Q  200 tttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttg 268  Q
    |||||||||||| |||||| | |||| ||||||||||| |||||||||| |  |||||||||||||||||    
T  7391695 tttgtattctcattttcaccggtctctgttcgtcttgaacagagatctgatgatttaataaaatttgttg 7391626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 19572629 - 19572670
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaac 60  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  19572629 ttgaccaatttttcattttaattaaagtaaattaagtggaac 19572670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 26045675 - 26045590
Alignment:
Q  186 tacggcgcatgttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||| | |||||||||| ||||| ||||| | |||| |||||| |||||||  ||||| ||||||||||||||||| |||||    
T  26045675 tacggcgccttttgtttgtatgctcaacttcaccggtctctgttcgttttgagcattgatctagttgtttaataaaatttattgtt 26045590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 23516083 - 23515985
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||     | ||||||||||||||||||    
T  23516083 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattatttttattgttccttaaccagtgcccc-----ctggggcactggatagcatt 23515989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 33143649 - 33143579
Alignment:
Q  201 ttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||| |||||| ||| |  ||||| |||||||||||||||||||||||||||||||||||||||    
T  33143649 ttgtattctcagtttcaccgatttatgttcgccttgagcagagatctggttgtttaataaaatttgttgtt 33143579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 37123750 - 37123824
Alignment:
Q  197 ttgtttgtattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| ||||| || |||| ||||||||||||||||||| |  |||||||||||||||| |||||    
T  37123750 ttgtttgtattctcagtttcatcggtctcagttcgtcttgagcagagatttaattgtttaataaaatttcttgtt 37123824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 46358058 - 46358009
Alignment:
Q  221 tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||||||    
T  46358058 tctctgttcgtcttgagcagggatctggttgttaaataaaatttgttgtt 46358009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 32010189 - 32010241
Alignment:
Q  218 cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||| |||||||||||| || |||||||||||| ||||||||||||||||    
T  32010189 cgatctctgttcgtcttgagtagggatctggttgttaaataaaatttgttgtt 32010241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 14893310 - 14893384
Alignment:
Q  197 ttgtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||| ||||  |||||| | |||| |||| ||||||||||  ||||||||||||||||||||||||||||    
T  14893310 ttgtttgtactctcggtttcaccagtctctgttcatcttgagcagttatctggttgtttaataaaatttgttgtt 14893384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 28937426 - 28937360
Alignment:
Q  200 tttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttg 265  Q
    ||||||||||||||||||| | ||||  |||||||||| ||||||||||||| |||||||| |||||    
T  28937426 tttgtattctcaatttcaccggtctctcttcgtcttgaacagagatctggttatttaataatatttg 28937360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 50518790 - 50518716
Alignment:
Q  197 ttgtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||| ||||   ||||||||||||||||| ||||    
T  50518790 ttgtttgtattctcagtttcaccagtctctgttcgtcttgagcagggatcaaattgtttaataaaatttgatgtt 50518716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 48893054 - 48892981
Alignment:
Q  197 ttgtttgtattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgt 269  Q
    ||||||||||||||| ||||| |  |||  ||||||||||||||| ||||| ||||||||||||||||| ||||    
T  48893054 ttgtttgtattctcagtttcatctgtctttgttcgtcttgagcagggatctagttgtttaataaaatttattgt 48892981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 823073 - 823029
Alignment:
Q  221 tctccgttcgtcttgagcagagatctggttgtttaataaaatttg 265  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||||    
T  823073 tctctgttcgtcttgagcagcgatctggttttttaataaaatttg 823029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 4171124 - 4171196
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttg 268  Q
    ||||||||||||||| |||||| | |||| ||||||||| ||||| ||| | ||||||||||| |||||||||    
T  4171124 ttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggatttagttgtttaatagaatttgttg 4171196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 14280247 - 14280182
Alignment:
Q  200 tttgtattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaattt 264  Q
    |||||||| ||| ||||| ||||||  |||||||||||||| ||||||| ||||||||||| ||||    
T  14280247 tttgtattatcagtttcatcgatctttgttcgtcttgagcaaagatctgattgtttaataatattt 14280182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 25648063 - 25648132
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttg 265  Q
    ||||||||||||| | |||||| |||||| ||||||||||| ||| |||  ||||||||||| |||||||    
T  25648063 ttgtttgtattcttagtttcaccgatctctgttcgtcttgaacagggattaggttgtttaattaaatttg 25648132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 23536 - 23610
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccc 93  Q
    |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  23536 ttgaccaacttttcactttaattaaagtaaattaagtggaaccaattaattttattgtttcttaaccagtgcccc 23610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 20969039 - 20968965
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccc 93  Q
    |||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  20969039 ttgaccaacttttcactttaattaaagtaaattaagtggaatcaattaattttattgttccttaaccagtgcccc 20968965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 3880313 - 3880239
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||| ||| |||||| | |||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  3880313 ttgtttgtattttcagtttcaccggtctctgttcgtcttgagcagggatctgattgtttaataaaatttgttgtt 3880239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 9960418 - 9960355
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttcctta 82  Q
    |||||||| ||||| ||||||||| |||||||||||| |||  |||||||||||||||||||||    
T  9960418 ttgaccaacttttcactttaattagagtaaattaagtagaatcaattaattttattgttcctta 9960355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 20701498 - 20701429
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgt 266  Q
    ||||||||||||||| |||||| |||||| |||||||||||| || ||| |||||||||||||||||||||    
T  20701498 ttgtttgtattctcagtttcaccgatctctgttcgtcttgag-agggatttggttgtttaataaaatttgt 20701429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 2480806 - 2480707
Alignment:
Q  19 ttgaccaatttttccctttaatta-aagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcat 117  Q
    |||||||||||||   |||||||  ||||||||||||||| ||  ||| |||||||||||||||| ||||      |||||| |||||||||||||||||    
T  2480806 ttgaccaatttttaattttaatttgaagtaaattaagtgggacccattgattttattgttccttaaccag------tgccccgggggcactggatagcat 2480713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 11439721 - 11439647
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11439721 ttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 11439647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 34540847 - 34540947
Alignment:
Q  20 tgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcatta 119  Q
    ||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| |||||   ||||  ||  ||||||||||||||||||    
T  34540847 tgaccaacttttcactttaattaaagtaaattaagtggaatcaattaattttattgttccttaaccagt--acctgatcccagggcactggatagcatta 34540944  T
Q  120 ccc 122  Q
    |||    
T  34540945 ccc 34540947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 32824269 - 32824343
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccc 93  Q
    |||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| |||| |||||    
T  32824269 ttgaccaacttttcactttaattaaagtaaattaagtggaatcaattaattttattgttccttaaccagggcccc 32824343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 4431044 - 4431129
Alignment:
Q  186 tacggcgcatgttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||| | |||||||||||||||||||||| | ||||  |||||||||||||||||| || ||||||||||||||||| ||||    
T  4431044 tacggcgccttttgtttgtattctcaatttcaccggtctctattcgtcttgagcagagatatgtttgtttaataaaatttgctgtt 4431129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 7451962 - 7451888
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||| |||||||||||| ||||| ||||    
T  7451962 ttgtttgtattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgctgtt 7451888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 9313016 - 9312967
Alignment:
Q  221 tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  9313016 tctctgttcgtcttgagcagagatctcgttgtttaataaaatttgttgtt 9312967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 9557319 - 9557362
Alignment:
Q  227 ttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  9557319 ttcgtcttgagcagagatctggttgtttaacaaaatttgttgtt 9557362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 27102562 - 27102636
Alignment:
Q  197 ttgtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||||||||  ||||| | |||  ||||||||||| |||||||||||||||||||||||||||| ||||    
T  27102562 ttgtttgtattctcaggttcaccagtctttgttcgtcttgaacagagatctggttgtttaataaaatttgctgtt 27102636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 44681632 - 44681729
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcatt 118  Q
    |||||||||||||   ||||||| |||||||||||||||  |  ||| |||||||||||||||| ||||      |||||| ||||||||||||||||||    
T  44681632 ttgaccaatttttaattttaattgaagtaaattaagtggggcccattgattttattgttccttaaccag------tgcccccggggcactggatagcatt 44681725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 46768557 - 46768626
Alignment:
Q  197 ttgtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttg 265  Q
    |||||||||| ||||||||||| | |||| ||||||||||||||   || ||||||||||||||||||||    
T  46768557 ttgtttgtatgctcaatttcaccaatctctgttcgtcttgagcaagaatttggttgtttaataaaatttg 46768626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 27905846 - 27905885
Alignment:
Q  231 tcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  27905846 tcttgagcagggatctggttgtttaataaattttgttgtt 27905885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 8123782 - 8123836
Alignment:
Q  28 ttttccctttaattaaagtaaattaagtggaactaattaattttattgttcctta 82  Q
    ||||| |||||||| ||||||||||| ||  ||| ||||||||||||||||||||    
T  8123782 ttttcactttaattgaagtaaattaaatgagactcattaattttattgttcctta 8123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 16577674 - 16577718
Alignment:
Q  226 gttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||| ||||| |||||||| ||||||||||| ||||    
T  16577674 gttcgtcttgagcggagatttggttgttaaataaaatttgatgtt 16577718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 32882773 - 32882817
Alignment:
Q  226 gttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| ||| || ||||||||||||||||| ||||    
T  32882773 gttcgtcttgagcagggatgtgattgtttaataaaatttgctgtt 32882817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 34159057 - 34159097
Alignment:
Q  230 gtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||| |||||| |||||||||||| |||||||||    
T  34159057 gtcttgagcagggatctgattgtttaataaattttgttgtt 34159097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 52278665 - 52278717
Alignment:
Q  201 ttgtattctcaatttcacgatctccgttcgtcttgagcagagatctggttgtt 253  Q
    ||||||||||  ||||||  |||| ||||||||||||||| ||||||||||||    
T  52278665 ttgtattctctgtttcacagtctctgttcgtcttgagcagggatctggttgtt 52278717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 7940225 - 7940288
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttcctta 82  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  7940225 ttgaccaatttttcactttaattaaagtaaattaagtggaatcaattaattttattgttcctta 7940288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 22325772 - 22325734
Alignment:
Q  227 ttcgtcttgagcagagatctggttgtttaataaaatttg 265  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  22325772 ttcgtcttgagcagcgatctggttatttaataaaatttg 22325734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 8862295 - 8862251
Alignment:
Q  226 gttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||||| || |||||||||| ||| ||||||||||||||    
T  8862295 gttcgtcttgagtagggatctggttgcttagtaaaatttgttgtt 8862251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 36599592 - 36599517
Alignment:
Q  18 attgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccc 93  Q
    ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  36599592 attgatcaacttttcactttaattaaagtaaattaagtggaactaattaattttattggtccttaactagtgcccc 36599517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 2280548 - 2280453
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcatt 118  Q
    |||||||| ||||| |||||||||||||||||||||| |||  ||||||||||||||||| ||| |||||||||        ||||||||||||||||||    
T  2280548 ttgaccaacttttcactttaattaaagtaaattaagtagaatcaattaattttattgttctttaaccagtgccc--------ggggcactggatagcatt 2280457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 41086502 - 41086431
Alignment:
Q  200 tttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||| |||| |||||| | |||| ||||||||||||||||||||| ||||||||| |||||||||||||    
T  41086502 tttgtatgctcagtttcactggtctctgttcgtcttgagcagagatctagttgtttaacaaaatttgttgtt 41086431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 7696341 - 7696415
Alignment:
Q  197 ttgtttgtattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||||||||| || |||| |||| |||||||||| ||| |||||||| ||||||||||| ||||    
T  7696341 ttgtttgtattctcaatttcatcggtctctgttcatcttgagcagggatttggttgttcaataaaatttgctgtt 7696415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 33533445 - 33533371
Alignment:
Q  197 ttgtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||| || | |||||| | |||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  33533445 ttgtttgtatccttagtttcaccagtctctgttcgtcttgagcagagatctggctgttaaataaaatttgttgtt 33533371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 42802466 - 42802540
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||||||| |||||| |||||| |||||||||||  || |||  ||||||||||||||||||||||||    
T  42802466 ttgtttgtattctcagtttcactgatctctgttcgtcttgaatagggattaggttgtttaataaaatttgttgtt 42802540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 34230581 - 34230648
Alignment:
Q  197 ttgtttgtattctcaatttcacgatctccgttcgtcttgagcagagatctggttgtttaataaaattt 264  Q
    |||||||||||| || ||   ||||||| ||||||||||||||||||| |||||||||||||| ||||    
T  34230581 ttgtttgtattcgcagttcaccgatctctgttcgtcttgagcagagatatggttgtttaataatattt 34230648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 4975127 - 4975199
Alignment:
Q  199 gtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||| | |||||| | |||| |||||||||||||||||| ||| | ||| ||||||||||||||||    
T  4975127 gtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttgttgtt 4975199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 4993035 - 4993107
Alignment:
Q  199 gtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||| | |||||| | |||| |||||||||||||||||| ||| | ||| ||||||||||||||||    
T  4993035 gtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttgttgtt 4993107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 37559838 - 37559910
Alignment:
Q  199 gtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||||||||||||| |||||| ||||||||| | ||| |||||  || || ||||||||||||||||    
T  37559838 gtttgtattctcaatttcaccgatctctgttcgtcttaaacagggatctcatttttaaataaaatttgttgtt 37559910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 29139613 - 29139579
Alignment:
Q  236 agcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||||||||||||||||||||| ||||||||    
T  29139613 agcagagatctggttgtttaataaaaattgttgtt 29139579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 29997325 - 29997399
Alignment:
Q  197 ttgtttgtattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||| |||| ||||||||| || |||| ||||||||| | |||||| | | ||||||||||||||||||||||    
T  29997325 ttgtttttattttcaatttcatcggtctctgttcgtctttaccagagaccagattgtttaataaaatttgttgtt 29997399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 29487505 - 29487553
Alignment:
Q  221 tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||| |||| |||||||||| ||||||||| |||||||||||||||||||    
T  29487505 tctctgttcatcttgagcagggatctggtt-tttaataaaatttgttgtt 29487553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 10173258 - 10173206
Alignment:
Q  218 cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||| |||||||||||||||  ||||||||||| | ||||||||| ||||    
T  10173258 cgatctctgttcgtcttgagcaggaatctggttgttaagtaaaatttgatgtt 10173206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 26742644 - 26742724
Alignment:
Q  295 aacacttataataacaaatcaaggaaccactgaaatctcaaacgtagcaacaattttgttctaaattcgattcaaggagca 375  Q
    ||||||||||| ||||| || ||||| |||| |||||||||  | ||||||||||||  | |||||| || ||||||||||    
T  26742644 aacacttataacaacaattcgaggaatcactcaaatctcaagtggagcaacaatttttctttaaatttgactcaaggagca 26742724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 7575686 - 7575623
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttcctta 82  Q
    |||||||| |||||  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  7575686 ttgaccaacttttcattttaattaaagtaaattaagtggaaccaattaattttattgttcctta 7575623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 41117669 - 41117595
Alignment:
Q  197 ttgtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||| ||||||||||||   |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  41117669 ttgtttgtagtctcaatttcacctgtctctgttcgtcttgagcagagatctagttgtttaataaaatttgttgtt 41117595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 43005570 - 43005507
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttcctta 82  Q
    |||||||| ||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  43005570 ttgaccaacttttcactttaattaaagtaaattaagtgaaatcaattaattttattgttcctta 43005507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 27109017 - 27109115
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccctgccccaggggcactggatagcatt 118  Q
    |||||||||||||   ||||||| ||||||||||||||| ||  ||| |||||||||||||||| ||||      |||||| ||||||||||||||||||    
T  27109017 ttgaccaatttttaattttaattgaagtaaattaagtgggacccattgattttattgttccttaaccag------tgccccgggggcactggatagcatt 27109110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 9262812 - 9262897
Alignment:
Q  186 tacggcgcatgttgtttgtattctcaatttca-cgatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||| | ||||||||||||||| ||||| || |||  ||||||||||||| | ||| |||||||||||||||||||| ||||    
T  9262812 tacggcgccttttgtttgtattctcagtttcatcggtctttgttcgtcttgagcggggatttggttgtttaataaaatttgctgtt 9262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 42719536 - 42719608
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttg 268  Q
    ||||||||||||||| |||||| | ||||  |||||||||||||| ||| || ||||||||||||||||||||    
T  42719536 ttgtttgtattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtttaataaaatttgttg 42719608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 12633315 - 12633389
Alignment:
Q  19 ttgaccaatttttccctttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcccc 93  Q
    |||||||||||||   ||||||| |||||||||||||||  |  ||| |||||||||||||||| ||||||||||    
T  12633315 ttgaccaatttttaattttaattgaagtaaattaagtggggcccattgattttattgttccttaaccagtgcccc 12633389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 19814893 - 19814849
Alignment:
Q  221 tctccgttcgtcttgagcagagatctggttgtttaataaaatttg 265  Q
    |||| ||||||||||||||| |||||||||||| |||||||||||    
T  19814893 tctctgttcgtcttgagcagggatctggttgttaaataaaatttg 19814849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 25163868 - 25163924
Alignment:
Q  35 tttaattaaagtaaattaagtggaactaattaattttattgttccttatccagtgcc 91  Q
    ||||||| |||||||||||||||  || ||| |||||||||||||||| ||||||||    
T  25163868 tttaattgaagtaaattaagtggggctcattgattttattgttccttaaccagtgcc 25163924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 16832721 - 16832646
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgttt-aataaaatttgttgtt 270  Q
    ||||||||||||||| |||||| ||| || ||| |||||||| || | ||||||||||| ||||||||||||||||    
T  16832721 ttgtttgtattctcagtttcaccgatttctgtttgtcttgagaaggggtctggttgttttaataaaatttgttgtt 16832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 39419352 - 39419298
Alignment:
Q  210 caatttcacgatctccgttcgtcttgagcagagatctggttgtttaataaaattt 264  Q
    |||||||||  |||| | |||||||||| |||||| |||||||||||||||||||    
T  39419352 caatttcaccgtctctgatcgtcttgaggagagatatggttgtttaataaaattt 39419298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 2061533 - 2061460
Alignment:
Q  197 ttgtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgt 269  Q
    ||||||||||||||| |||||  | | || |||||||||| |||| ||||||  ||||||||||||||||||||    
T  2061533 ttgtttgtattctcagtttcatcagtttctgttcgtcttgggcagggatctgactgtttaataaaatttgttgt 2061460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 22810874 - 22810825
Alignment:
Q  197 ttgtttgtattctcaatttcacga-tctccgttcgtcttgagcagagatc 245  Q
    |||||||||||||||||||||| | |||| ||||||||||||||| ||||    
T  22810874 ttgtttgtattctcaatttcaccagtctctgttcgtcttgagcagggatc 22810825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 38636946 - 38636861
Alignment:
Q  186 tacggcgcatgttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||||| | ||||||||| ||||| |||||| | |||| ||||||| ||| | | || ||||||||||||||||||||| ||||    
T  38636946 tacggcgcctcttgtttgtagtctcattttcaccggtctctgttcgtcctgaacggggacctggttgtttaataaaatttgctgtt 38636861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 52009206 - 52009279
Alignment:
Q  198 tgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||| || |||| |||||| ||||||  ||||||||| |||| |||||||| ||||||||||||||| ||||    
T  52009206 tgtttgcatgctcagtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgctgtt 52009279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 48098686 - 48098730
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcag 240  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||||    
T  48098686 ttgtttgtattttcagtttcaccgatctccgttcgtcttgagcag 48098730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 37087 - 37161
Alignment:
Q  197 ttgtttgtattctcaatttcac-gatctccgttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    ||||||||||| ||| |||||| | |||| ||||||||||||||| |||| |||||||||||||| |||||||||    
T  37087 ttgtttgtattatcagtttcaccggtctctgttcgtcttgagcagggatcaggttgtttaataaattttgttgtt 37161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 1330 - 1286
Alignment:
Q  226 gttcgtcttgagcagagatctggttgtttaataaaatttgttgtt 270  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||    
T  1330 gttcgttttgagcagggatctggttgcttaataaaatttgttgtt 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University