View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_high_30 (Length: 411)
Name: NF11036_high_30
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_30 |
 | |
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| [»] chr5 (14 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0627 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 8530050 - 8529659
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8530050 |
ccacattctccttcgacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
8529951 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacgcgacaccgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttgagattg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529950 |
cactttgagcgatcaccaattagtctcatgattcgaacgcgacaccgagtgtcaagaaccctgtaccttcttgagtgcgagcctgataagtttgagattg |
8529851 |
T |
|
| Q |
220 |
gaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagaacccttt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8529850 |
gaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagcgcccttt |
8529751 |
T |
|
| Q |
320 |
tcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattgcttgcaacagagatatagata |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8529750 |
tcgtgctgccagattagtttcagggaaaaacgacgagaacagtgataggggtagacagagtctttatattgcttgcaacagagatattgata |
8529659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 400
Target Start/End: Original strand, 1599290 - 1599673
Alignment:
| Q |
23 |
cattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcac |
122 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
1599290 |
cattctgcttcaacttcctattaagtcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatcgcac |
1599389 |
T |
|
| Q |
123 |
tttgagcgatcaccaattagtctcatgattcgaacgc--gac----accgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttgaga |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||| ||||||| ||||||| | |||||||||||||||| || ||||| |||||||||| |
|
|
| T |
1599390 |
tttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaaccttgtaccttcttgagtgtgaacctgaaaagtttgaga |
1599489 |
T |
|
| Q |
217 |
ttggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagaaccc |
316 |
Q |
| |
|
||||||||||| ||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |
|
|
| T |
1599490 |
ttggaagcaacgatcgtgtgaagcttgcgcctatgttcaagcttcctctcagatcatttagggataaaagtgacgagatcaataatgaatccaagcgccc |
1599589 |
T |
|
| Q |
317 |
ttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattgcttgcaacag |
400 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| || ||||||||| ||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
1599590 |
ttttcgtgctgcgagattagtttcggggaaaaaggatgagaacagtgatacgggtagacaaagtctttatattgcttgcaacag |
1599673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 404
Target Start/End: Complemental strand, 8536619 - 8536230
Alignment:
| Q |
21 |
cacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgc |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| | |||||||||||||| ||||||||||| | |
|
|
| T |
8536619 |
cacattctgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaatcacattttgctaaatccc |
8536520 |
T |
|
| Q |
121 |
actttgagcgatcaccaattagtctcatgattcgaacgc--gaca----ccgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttga |
214 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||| || ||| |||||| ||||||| ||||||||||||||| || ||| | |||||||| |
|
|
| T |
8536519 |
actttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaacaatgtaccttcttgagtctgatcctcaaaagtttga |
8536420 |
T |
|
| Q |
215 |
gattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagaac |
314 |
Q |
| |
|
||||||||||||| ||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536419 |
gattggaagcaacgatcatgtgaaacttgtgcctatgttcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagcga |
8536320 |
T |
|
| Q |
315 |
ccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattgcttgcaacagagat |
404 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
8536319 |
ccttttcgtgctgcgagattagtttcagggaaaaacgacgagaacagttatacgggtagacaaagtctttatattgcttgcaaaagagat |
8536230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 52 - 374
Target Start/End: Original strand, 9073751 - 9074079
Alignment:
| Q |
52 |
ttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagcgatcaccaattagtctcatgat |
151 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | ||||||||||| |||| |||||||||| ||| ||||||||| ||||| ||||| | ||||| |
|
|
| T |
9073751 |
ttctcatttgtaaatgtgtgtgcaaaatttggaaaagacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccacttagttttatgat |
9073850 |
T |
|
| Q |
152 |
tcgaacgcgacacc------gagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgca |
245 |
Q |
| |
|
||| || | || ||||||| |||| | |||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9073851 |
tcggacccttgacgatattagagtgtcgagaaccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgag |
9073950 |
T |
|
| Q |
246 |
cctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcaggga |
345 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||| ||| |||| |||||||||| ||||||||||| |||| |
|
|
| T |
9073951 |
cctatattcaagcttcctctcatatcatttagggataaaagaagcgagatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcgggga |
9074050 |
T |
|
| Q |
346 |
aaaacgacgagaacagttataggggtaga |
374 |
Q |
| |
|
||||| | ||||||| | |||||| |||| |
|
|
| T |
9074051 |
aaaacaatgagaacattgatagggataga |
9074079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 2873523 - 2873774
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||||||| |||| ||||||||||||| |||||| ||| ||||||||||| |||| |||||||||| | |
|
|
| T |
2873523 |
ccacattcttcttcaacttcccattaagtctcttctcatgtgtagatgtgtgtgcaaaacttggaatacacttatttcagaaccacattttgctaaattg |
2873622 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacgcgacac------cgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttg |
213 |
Q |
| |
|
|| ||||||||| ||||| ||||| || ||||||||| | || |||||||||||| ||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
2873623 |
caatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgcgaagctgaaaagtttg |
2873722 |
T |
|
| Q |
214 |
agattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
2873723 |
agattggaagcaacaatcatgtgaagcttgaccctatattcgagcttcctct |
2873774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 8638000 - 8637753
Alignment:
| Q |
24 |
attctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcact |
123 |
Q |
| |
|
||||| ||||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||| |||||||||| ||| | |
|
|
| T |
8638000 |
attctgcttcaactttccattaagtctcttctcatttgtaaatgtgtgtgcaagatttggaaaacaatgatttcggaaccacattttgctaaattgcaat |
8637901 |
T |
|
| Q |
124 |
ttgagcgatcaccaattagtctcatgattcgaac-------gcgacaccgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttgaga |
216 |
Q |
| |
|
|||||||| | || |||||||||||||||| || | | || ||||||||||| | |||||||||||||||| || | ||| |||||||||| |
|
|
| T |
8637900 |
ttgagcgagcgccccttagtctcatgattcggacaaatgatggtagact-agtgtcaagaaccatgtaccttcttgagtgtgatcatgaaaagtttgaga |
8637802 |
T |
|
| Q |
217 |
ttggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
8637801 |
ttggaagcaacaatcatgtgaagcttgcgcctatatttaagcttcctct |
8637753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 8547124 - 8547375
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
||||||||| ||| |||||| | |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
8547124 |
ccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaattg |
8547223 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacg-----cgacac-cgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttg |
213 |
Q |
| |
|
||||||||| |||||| | || |||| |||||| | || ||| | | ||||||||||| | |||||| ||||||||| |||||||| ||||| |
|
|
| T |
8547224 |
cactttgagagatcacaagtttgtctaatgatttggacagatgacgatagactagtgtcaagaaccatgtaccatcttgagtgtgagcctgaaaagttca |
8547323 |
T |
|
| Q |
214 |
agattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
8547324 |
agattggaagcaacaatcatgtgaagcttgatcctatattcaagcttcctct |
8547375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 2844077 - 2844328
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||| |||| ||||||||||||| ||||||| ||| |||| |||||| |||| |||||||||| | |
|
|
| T |
2844077 |
ccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaatacacttatatcagaaccacattttgctaaattg |
2844176 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacgcgacac------cgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttg |
213 |
Q |
| |
|
|| ||||||||| ||||| ||||| || ||||||||| | || |||||||||||| ||| |||||||||||||| || |||| ||||||| |
|
|
| T |
2844177 |
caatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttg |
2844276 |
T |
|
| Q |
214 |
agattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
2844277 |
agattggaagcaaaaatcatgtgaagcttgaccctatattcgagcttcctct |
2844328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 2855910 - 2856161
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||| |||| ||||||||||||| ||||||| ||| |||| |||||| |||| |||||||||| | |
|
|
| T |
2855910 |
ccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaatttggaatacacttatatcagaaccacattttgctaaattg |
2856009 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacgcgacac------cgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttg |
213 |
Q |
| |
|
|| ||||||||| ||||| ||||| || ||||||||| | || |||||||||||| ||| |||||||||||||| || |||| ||||||| |
|
|
| T |
2856010 |
caatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttg |
2856109 |
T |
|
| Q |
214 |
agattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
2856110 |
agattggaagcaaaaatcatgtgaagcttgaccctatattcgagcttcctct |
2856161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 8645339 - 8645098
Alignment:
| Q |
30 |
cttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagc |
129 |
Q |
| |
|
||||| ||||| |||| ||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||| |||||||||| | ||||||||| |
|
|
| T |
8645339 |
cttcatcttcccattaaatctcttctcatttgtgaatgtgtgtgcaagatttggaaaacacttatttcagaaccacattttgctaaattgaactttgagc |
8645240 |
T |
|
| Q |
130 |
gatcaccaattagtctcatgattcgaacgcgacac------cgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttgagattggaag |
223 |
Q |
| |
|
|||||| | || ||||||||||||| | || | ||||||||||| |||||||||||||||| || ||||| |||||| | |||||||| |
|
|
| T |
8645239 |
gatcacaagtttgtctcatgattcggatagatgactgtagactagtgtcaagaactatgtaccttcttgagtgtgatcctgaaaagtttcaaattggaag |
8645140 |
T |
|
| Q |
224 |
caacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
8645139 |
caacagtcgtgtcaagcttgcacctatatttaagcttcctct |
8645098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 9004491 - 9004356
Alignment:
| Q |
19 |
accacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatc |
118 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| |||| ||||||| |||||||||||| |||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
9004491 |
accacattctgcttcatcttcccattaagtctcttcttatttgtagatgtgtgtgcaagatttggaaaacaattatttcataaccacattttgctaaatt |
9004392 |
T |
|
| Q |
119 |
gcactttgagcgatcaccaattagtctcatgattcg |
154 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
9004391 |
gcaatttgagcgagcaccaattagtctcatgattcg |
9004356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 8678857 - 8678723
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
||||||| | ||||| ||||| |||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||| | |
|
|
| T |
8678857 |
ccacattttgcttcatcttcccattaaatctcttctcatttgtaaatgtgtgtgcaagatttggaaaacacttatttcagaaccacattttgctaaattg |
8678758 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcg |
154 |
Q |
| |
|
||||||||||||||| | || ||||||||||||| |
|
|
| T |
8678757 |
aactttgagcgatcacaagtttgtctcatgattcg |
8678723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 265
Target Start/End: Original strand, 2904052 - 2904280
Alignment:
| Q |
43 |
ttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagcgatcaccaattag |
142 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||| ||||||| ||| ||||||||||| | |||| ||||||| ||| ||||||||| ||||||| || |
|
|
| T |
2904052 |
ttaagtctcttctcatatgtagatgtgtgtgcaaaatttggaatacacttatttcagaacctaaattcgctaaattgcaatttgagcgagcaccaatcag |
2904151 |
T |
|
| Q |
143 |
tctcatgattcgaacgcgacaccg------agtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtc |
236 |
Q |
| |
|
| |||||||| ||| | | ||||||||||| ||| ||||||||||||||||| ||||| |||| ||| |||||| |||||||| ||| |
|
|
| T |
2904152 |
tttcatgattagaaaattagataatatagaagtgtcaagaaacctataccttcttgagtgcgaacctgaatagttcgagtttggaaccaacaatcttgtg |
2904251 |
T |
|
| Q |
237 |
aagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
|||||| ||||||||| | |||||||| |
|
|
| T |
2904252 |
aagcttaagcctatattcgaacttcctct |
2904280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 8678680 - 8678642
Alignment:
| Q |
227 |
caatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
8678680 |
caatcatgtcaagcttgcgcctatatttaagcttcctct |
8678642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 9444211 - 9443820
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
9444211 |
ccacattctccttcgacttccatttaagtctgttctcatttgtaaatctgtgtgcaaagtttggaaaacaatgatttcagaatcacaatttgctaaattg |
9444112 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacgcgacaccgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttgagattg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444111 |
cactttgagcgatcaccaattagtctcatgattcgaacacgacaccgagtgtcaagaaccctataccttcttgagtgcgagcctgataagtttgagattg |
9444012 |
T |
|
| Q |
220 |
gaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagaacccttt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
9444011 |
gaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaatattgaatccaagcgcccttt |
9443912 |
T |
|
| Q |
320 |
tcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattgcttgcaacagagatatagata |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
9443911 |
tcgtgctgccagattagtttcagggaaaaacaacgacaacagtgataggggtagacagagtctttatattgattgcaacagagatattgata |
9443820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 48360840 - 48361229
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
48360840 |
ccacattctccttcaacttcccattaagtctcttcttatttgtaaatctgtgtgcaaaatttggaaaacactgatttcagaatcacaatttgctaaatcg |
48360939 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacgc-gacacc----gagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttga |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || | ||| |||||||||||| | |||||||||||||||| || ||||| |||||||| |
|
|
| T |
48360940 |
cactttgagcgatcaccacttagtctcatgattcggaccctgactatagaggagtgtcaagaaccatgtaccttcttgagtgtgatcctgaaaagtttga |
48361039 |
T |
|
| Q |
215 |
gattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctctcagatcatttagggataaaagagaccagatcaataatgaatccaagaac |
314 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |
|
|
| T |
48361040 |
gattggaagcaacaaccatgtgaagcttacacctatattcaagcttcctctcagatcatttagggataaaagagacgatatcaataatgaatccaagcac |
48361139 |
T |
|
| Q |
315 |
ccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattgcttgcaacagagat |
404 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48361140 |
ccttttcgtgctgcaagattagtttcgggaaaaaatgatgagaacagtgataggggtagacaaagtctttatattgcttgcaacagagat |
48361229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 35780960 - 35780709
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
||||||| | ||||||||||| | || ||| |||||||||||| ||||||||||| | | || |||||||| ||||||||| | ||||||||||||| | |
|
|
| T |
35780960 |
ccacattttgcttcaacttcccataaaatctcttctcatttgtagatgtgtgtgcataatctgaaaaacaatgatttcagaaccgcaatttgctaaattg |
35780861 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacgcg------acaccgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttg |
213 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||| || || | | | |||||||||| |||| ||||||||||||| |||||||| ||||||| |
|
|
| T |
35780860 |
cactttgagctatcaccaactagtctcatggttcggacccgtcgcttagatcatgtgtcaagaaccctgcaccttcttgagtgtgagcctgaaaagtttg |
35780761 |
T |
|
| Q |
214 |
agattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
|| ||||||| ||||||| ||| ||||||| || ||||| ||||||||||| |
|
|
| T |
35780760 |
agtttggaaggaacaatcttgtgaagcttgaccccatatttaagcttcctct |
35780709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 265
Target Start/End: Complemental strand, 5733 - 5483
Alignment:
| Q |
21 |
cacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgc |
120 |
Q |
| |
|
|||||| | ||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||| |||| |||||||||| | |
|
|
| T |
5733 |
cacatttttcttcaacttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaaagcaatgatttcagaaccacattttgctaaattac |
5634 |
T |
|
| Q |
121 |
actttgagcgatcaccaattagtctcatgattcgaacgcgacac------cgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttga |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || || ||||||||||||| ||| ||||||||||| ||||| ||| | |||||||| |
|
|
| T |
5633 |
actttgagcgatcaccgattagtctcatgattcgaacaagatactatagacgagtgtcaagaaccctataccttcttgaatgcgatcctaaaaagtttga |
5534 |
T |
|
| Q |
215 |
gattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |||| |||| |
|
|
| T |
5533 |
gattggaagcaacaatcatgtgaagcttgagcctatattcaggcttactct |
5483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 16717447 - 16717196
Alignment:
| Q |
20 |
ccacattctccttcaacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcg |
119 |
Q |
| |
|
||||||| | ||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||| || |||||||||| |
|
|
| T |
16717447 |
ccacattttgcttcaacttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaaaagaatgatttcagaatcgcattttgctaaatta |
16717348 |
T |
|
| Q |
120 |
cactttgagcgatcaccaattagtctcatgattcgaacgcgacac------cgagtgtcaagaatcctgtaccttcttgagtgcgagcctgataagtttg |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| || || ||||||||||||| ||| |||||||| |||||||| || || ||||||| |
|
|
| T |
16717347 |
cactttgagcaatcaccaattagtctcatgattcgaacaagatactataaacgagtgtcaagaaccctctaccttctagagtgcgatccagaaaagtttg |
16717248 |
T |
|
| Q |
214 |
agattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcctct |
265 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||||||||| |||||||| |
|
|
| T |
16717247 |
agattggaagcaacaatcatgtgaatcttgagcctatattcagacttcctct |
16717196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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