View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_33 (Length: 394)
Name: NF11036_high_33
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 47708136 - 47707769
Alignment:
| Q |
17 |
acttacaacaacagaaattaattttgttgcgtgataaaatttcaatgatatctgatactacttcatccctgatcacacattccaaaattgcatcagcaat |
116 |
Q |
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| T |
47708136 |
acttacaacaacagaaattaattttgttgtgtgataaaatttcaatgatatctgatactacttcatccctaatcacacattccaaaattgcatcagcaat |
47708037 |
T |
|
| Q |
117 |
ctcaatactaacatctttcacctcagtcttaaattcactccattcattaattgaatccaagtaatccaaattcagcaagttacttagatttctctcataa |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47708036 |
ctcaatactaacatctttcacctcggtcttaaattcactccattcattaattgaatccaagtaatccaaattcagcaagttacttagatttctctcataa |
47707937 |
T |
|
| Q |
217 |
tttccacctctttcgctccattcttttgtcctctcccataacatcttccccaacttttcggcacccatgaattgcttacaatctttatctggaagacttt |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
47707936 |
tttccacctctttcactccattcttttgtcctctcccataacatcttccccaacttttcggcacccatgaattgcttacaatctttttctggaagatttt |
47707837 |
T |
|
| Q |
317 |
ttgcaagttctctcacacaatcaaataacaacctctttgtcttgtgcaacacccttttagatttcatc |
384 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47707836 |
ttgtaagttctctcacacaatcaaataacaacctctttgtcttgtgcaacacccttttagatttcatc |
47707769 |
T |
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