View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_high_37 (Length: 379)

Name: NF11036_high_37
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_high_37
NF11036_high_37
[»] chr3 (2 HSPs)
chr3 (1-359)||(36082513-36082871)
chr3 (4-165)||(22931690-22931850)
[»] chr1 (1 HSPs)
chr1 (4-164)||(51866451-51866602)
[»] chr2 (1 HSPs)
chr2 (108-163)||(7468128-7468183)
[»] chr8 (3 HSPs)
chr8 (109-150)||(44912715-44912756)
chr8 (69-150)||(44913657-44913739)
chr8 (106-150)||(25479825-25479869)
[»] chr4 (2 HSPs)
chr4 (109-150)||(24412976-24413017)
chr4 (107-150)||(26905357-26905400)
[»] scaffold0019 (1 HSPs)
scaffold0019 (107-148)||(59573-59614)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 36082871 - 36082513
Alignment:
Q  1 attattgttgtaagctatgtgtattcattggattatgaaagtagttacaacattccctttatataagacttattcacgttcgttgcttagtaagaaatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36082871 attattgttgtaagctatgtgtattcattggattatgaaagtagttacaacattccctttatataagacttattcacgtttgttgcttagtaagaaatct 36082772  T
Q  101 aatcatactaacaaacttagctagatcacctaactaacttgtaacaaactactaaccatgttttaatatnnnnnnnnnnnnnnnnnncttgaattaaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||    
T  36082771 aatcatactaacaaacttagctagatcacctaactaacttgtaacaaactactaaccatgttttaatataaaaaataaaaataaaaacttgaattaaaac 36082672  T
Q  201 taacaaattcaagtttgcattccgctccaaaacattacgaatagcaagattcgacctcgttggaatacgatctaatagtaaccttcaagaaaacaccaca 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36082671 taacaaattcaagtttgcattccgctccaaaacattacaaatagcaagattcgacctcgttggaatacgatctaatagtaaccttcaagaaaacaccaca 36082572  T
Q  301 acttttgatggagccagacttcttcaccacctccaccaaattcccaataccatccccat 359  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  36082571 acttttgatggaatcagacttcttcaccacctccaccaaattcccaataccatccccat 36082513  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 22931690 - 22931850
Alignment:
Q  4 attgttgtaagctatgtgtatt-cattggattatgaaagtagttacaacattccctttatataagacttattcacgttcgttgcttagtaagaaatctaa 102  Q
    |||||||||| ||||||||||| ||||  ||| ||||| ||||||||||| |||  ||||||| ||||||||||  ||  |||||||||||| |||||||    
T  22931690 attgttgtaaactatgtgtatttcatta-attgtgaaaatagttacaacactcc--ttatataggacttattcaatttgcttgcttagtaagcaatctaa 22931786  T
Q  103 tcatact-aacaaacttagctagatcacctaactaacttgtaacaaactactaaccatgtttta 165  Q
     || ||| |||||||||||||| ||||||| ||| ||||||||||||||||||| |||||||||    
T  22931787 acaaacttaacaaacttagctacatcacctgactcacttgtaacaaactactaaacatgtttta 22931850  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 51866451 - 51866602
Alignment:
Q  4 attgttgtaagctatgtgtatt-cattggattatgaaagtagttacaacattccctttatataagacttattcacgttcgttgcttagtaagaaatctaa 102  Q
    |||||||||| |||||| | || |||| |||| ||||| |||||||||||| ||  ||||||| ||||||||||| ||  ||| |||||||| |||||||    
T  51866451 attgttgtaaactatgtctttttcattagattgtgaaaatagttacaacatgcc--ttatataggacttattcactttgcttgtttagtaagtaatctaa 51866548  T
Q  103 tcatactaacaaacttagctagatcacctaactaacttgtaacaaactactaaccatgtttt 164  Q
            |||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  51866549 --------acaaacttagctagatcatctaactaacttgtaacaaactactaaacatgtttt 51866602  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 7468128 - 7468183
Alignment:
Q  108 ctaacaaacttagctagatcacctaactaacttgtaacaaactactaaccatgttt 163  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  7468128 ctaacaaacttagctaggtcatctaactaacttgtaacaaactactaaacatgttt 7468183  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 44912715 - 44912756
Alignment:
Q  109 taacaaacttagctagatcacctaactaacttgtaacaaact 150  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  44912715 taacaaacttagctagattacctaactaacttgtaacaaact 44912756  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 44913657 - 44913739
Alignment:
Q  69 cttattcacgttcgttgcttagtaagaaatctaatcatac-taacaaacttagctagatcacctaactaacttgtaacaaact 150  Q
    ||||||||| ||  ||||||||||||  |||||| || || |||||||  ||||||||| |||||||||||||||||||||||    
T  44913657 cttattcacattgcttgcttagtaagctatctaaacaaacataacaaatatagctagattacctaactaacttgtaacaaact 44913739  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 25479869 - 25479825
Alignment:
Q  106 tactaacaaacttagctagatcacctaactaacttgtaacaaact 150  Q
    |||||| ||||||||||||||  |||||||||||| |||||||||    
T  25479869 tactaaaaaacttagctagatttcctaactaacttttaacaaact 25479825  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 24412976 - 24413017
Alignment:
Q  109 taacaaacttagctagatcacctaactaacttgtaacaaact 150  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  24412976 taacaaacttagctagattacctaactaacttgtaacaaact 24413017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 26905400 - 26905357
Alignment:
Q  107 actaacaaacttagctagatcacctaactaacttgtaacaaact 150  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  26905400 actaacaaacttagctagattttctaactaacttgtaacaaact 26905357  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 59573 - 59614
Alignment:
Q  107 actaacaaacttagctagatcacctaactaacttgtaacaaa 148  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  59573 actaacaaacttagcaagatttcctaactaacttgtaacaaa 59614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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