View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_4 (Length: 763)
Name: NF11036_high_4
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 21 - 750
Target Start/End: Complemental strand, 27028216 - 27027488
Alignment:
| Q |
21 |
actgatccgtatatgtaattgtatcaagcttgaaatttgtaattgtaatttttgttagccgtaaaggattaaaaataataaagaaattctgactatattt |
120 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27028216 |
actgatccgtatatgtaattgtatcaagtttgaaatttgtaattgtaatttttgttagccgtaaaggattaaaaataataaagaaattctgactatattt |
27028117 |
T |
|
| Q |
121 |
aagaatgttttaccctgttaatgtattttattttgctgattgagtagcaattcgtgcaatcgagttgaagaatcattcttccctcaatggaaaagtgata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27028116 |
aagaatgttttaccctgttaatgtattttattttgctgattgagtagcaattcgtgcaatcgagttgaagaatcattcttccctcaatggaaaagtgata |
27028017 |
T |
|
| Q |
221 |
agagtcatgtggttaagtcgtgatgctgatgcaaggaagagtggcaaagggaatgtgtttgttaaggtatatgttatacattattacactatcttgcttt |
320 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27028016 |
agggtcatgtggttaagtcgtgatgctgatgcaaggaagagtggcaaagggaatgtgtttgttaaggtatatgttatacattattacactatcttgcttt |
27027917 |
T |
|
| Q |
321 |
gatgcgaaatgcttaaatgatgatattccgattcatttttatgtatgaagtgaattctaatgaaaactttctggtgtcaatatacagaacttagcagcat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027916 |
gatgcgaaatgcttaaatgatgatattccgattcatttttatgtatgaagtgaattctaatgaaaactttctggtgtcaatatacagaacttagcagcat |
27027817 |
T |
|
| Q |
421 |
ccatagataatgtgggactacatgatttatttcaaaaatatgggaacattttgtccagcaaaattgccaggtctgaggatgggaagagcaaagggtttgg |
520 |
Q |
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| T |
27027816 |
ccatagataatgtgggactacatgatttatttcaaaaatatgggaacattttgtccagcaaaattgccaggtctgaggatgggaagagcaaagggtttgg |
27027717 |
T |
|
| Q |
521 |
ttatatccagtttgattcagaggagtctgcaaatgtggctatccagaaaatgaatggctctactgtgagagataagcagatgtatgtgaaattattttag |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027716 |
ttatatccagtttgattcagaggagtctgcaaatgtggctatccagaaaatgaatggctctactgtgagagataagcagatgtatgtgaaattattttag |
27027617 |
T |
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| Q |
621 |
cgcttgttaaaatttgccgtcattgatatccatatatgttgtgatttgaagtctatgnnnnnnnnngccttcagttaattgctgtttttgttatcctaag |
720 |
Q |
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| T |
27027616 |
cgcttgttaaaatttgccgtcattgatatccatatatgttgtgatttgaagtctatg-ttttttttgccttcagttaattgctgtttttgttatcctaag |
27027518 |
T |
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| Q |
721 |
attggttttaatctgattccaattcttctc |
750 |
Q |
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| T |
27027517 |
attggttttaatctgattccaattcttctc |
27027488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 41652940 - 41653064
Alignment:
| Q |
166 |
agcaattcgtgcaatcgagttgaagaatcattcttccctcaatggaaaagtgataagagtcatgtggttaagtcgtgatgctgatgcaaggaagagtggc |
265 |
Q |
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|||||||||||| || ||| |||||||||||||| | | |||||||||| || || || ||||||| | |||||||| ||||||||||||| ||| | |
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| T |
41652940 |
agcaattcgtgccattgaggtgaagaatcattctacattgaatggaaaagctattagggtgatgtggtcacgtcgtgatcctgatgcaaggaaaagttgt |
41653039 |
T |
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| Q |
266 |
aaagggaatgtgtttgttaaggtat |
290 |
Q |
| |
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| T |
41653040 |
atagggaacgtgtttgttaaggtat |
41653064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 750
Target Start/End: Complemental strand, 17000046 - 17000007
Alignment:
| Q |
711 |
ttatcctaagattggttttaatctgattccaattcttctc |
750 |
Q |
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| T |
17000046 |
ttatcctaagattcgttttaatctaattccaattcttctc |
17000007 |
T |
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