View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_41 (Length: 355)
Name: NF11036_high_41
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 2 - 329
Target Start/End: Original strand, 41451941 - 41452268
Alignment:
| Q |
2 |
atattgcatatttctggagggagtaatcacttataagcatctattgcatacttcacttgtattnnnnnnnnnnnttgatattgtagttaatgtgttattt |
101 |
Q |
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| T |
41451941 |
atattgcatatttctggagggagtaatcacttataagcatctattgcatatttcacttgtattaaaaaaaaaa-ttgatattgtagttaatgtgttattt |
41452039 |
T |
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| Q |
102 |
tatgtatgaatatacctaaaatacttcttttgtatatgcgttagttcattttgacttttcatatttcagacgcttaaaaacctagaaaaactatttaggc |
201 |
Q |
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| T |
41452040 |
tatgtatgaatatacctaaaatacttcttttgtatatgtgttagttcattttgacttttcatatttcagacgtttaaaaacctagaaaaactatttaggc |
41452139 |
T |
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| Q |
202 |
tcttgttttgaatgtttgtttaaggttccttcgttgttgttatgaagctaccggtacctttag-atagaaaaggctaacatttaaccataagttcgattt |
300 |
Q |
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| T |
41452140 |
tcttgttttgaatgttagtttaaggttcctttgttgttgttatgaagctaccggtacctttagaaaagaaggagctaacatttaaccataagttcgattt |
41452239 |
T |
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| Q |
301 |
tagtttataaatgtttctaaaagcctatc |
329 |
Q |
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| T |
41452240 |
tattttataaatgtttctaaaagcctatc |
41452268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 41440899 - 41440992
Alignment:
| Q |
235 |
ttgttgttatgaagctaccggtacctttagatagaaaaggctaacatttaaccataagttcgattttagtttataaatgtttctaaaagcctat |
328 |
Q |
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| T |
41440899 |
ttgttgttatgaagctactgatacctttagaaactaggggctaatatttgaccataagttccatattattttataaatgtttctaaaagtctat |
41440992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 34127533 - 34127492
Alignment:
| Q |
83 |
tgtagttaatgtgt-tattttatgtatgaatatacctaaaat |
123 |
Q |
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| T |
34127533 |
tgtagttaatgtgtctattttatgtatgaatatacctaaaat |
34127492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 53656057 - 53656016
Alignment:
| Q |
76 |
ttgatattgtagttaatgtgtt-attttatgtatgaatatac |
116 |
Q |
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| T |
53656057 |
ttgatagtgtagttaatgtgtttattttatgtatgaatatac |
53656016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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