View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_48 (Length: 307)
Name: NF11036_high_48
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 37975683 - 37975414
Alignment:
| Q |
21 |
cacagatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatgatatggt |
120 |
Q |
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| T |
37975683 |
cacagatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatggtatggt |
37975584 |
T |
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| Q |
121 |
ttatagcttagattagattctgtgatttattaggcacattacaaagttgacnnnnnnnnnnnnnnnnnnnnnntagggactggtggaataattggtgctt |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37975583 |
ttatggcttagattagattctgtgatttattaggcacattacaaagttgacaaaagaaaagaaaaaagaagaatagggactggtggaataattggtgctt |
37975484 |
T |
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| Q |
221 |
aagttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975483 |
aagttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaat |
37975414 |
T |
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