View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_49 (Length: 306)
Name: NF11036_high_49
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_49 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 27702888 - 27702958
Alignment:
| Q |
16 |
tatatatcactgtaagccttttgcgtgcttataagttagtggaacgtcaactttgtatcatgtttcaattg |
86 |
Q |
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| T |
27702888 |
tatatatcactgtaagccttttgcgtgcttataagttagtggaacgtcaactatgtatcatgtttcaattg |
27702958 |
T |
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Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 27714575 - 27714637
Alignment:
| Q |
21 |
atcactgtaagccttttgcgtgcttataagttagtggaacgtcaactttgtatcatgtttcaa |
83 |
Q |
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| T |
27714575 |
atcactgtaaaccttttgcgtgcttataagttagtggaatgtcaattatgtatcatgtttcaa |
27714637 |
T |
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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 26627157 - 26627060
Alignment:
| Q |
164 |
aatttctataaatcaagagaaaataattatccccct---------ctgacacggacatggacactggacttgatagtgactccttcatcgactccgat |
252 |
Q |
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| T |
26627157 |
aatttctataaatcaagagggaaaaattatcccccttattaagcactgacacggacatggacactggacttgatagtgactgattcatcgactccgat |
26627060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 26733134 - 26733037
Alignment:
| Q |
164 |
aatttctataaatcaagagaaaataattatccccct---------ctgacacggacatggacactggacttgatagtgactccttcatcgactccgat |
252 |
Q |
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| T |
26733134 |
aatttctataaatcaagagggaaaaattatcccccttattaagcactgacacggacatggacactggacttgatagtgactgattcatcgactccgat |
26733037 |
T |
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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 26963133 - 26963072
Alignment:
| Q |
121 |
attggtaagctttgtgtaaaatattttcatttataatttctaaaatttctataaatcaagag |
182 |
Q |
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| T |
26963133 |
attgttaagctctgtgtaaaatattttcatttataatttctaaaatttctatcaaccaagag |
26963072 |
T |
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Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 26627474 - 26627411
Alignment:
| Q |
21 |
atcactgtaagccttttgcgtgcttataagttagtggaacgtcaactttgtatcatgtttcaat |
84 |
Q |
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| T |
26627474 |
atcactgtaaaccttctgcgtgcttataagttagtggaatatcaactatgtatcatgtttcaat |
26627411 |
T |
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Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 26733451 - 26733388
Alignment:
| Q |
21 |
atcactgtaagccttttgcgtgcttataagttagtggaacgtcaactttgtatcatgtttcaat |
84 |
Q |
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| T |
26733451 |
atcactgtaaaccttctgcgtgcttataagttagtggaatatcaactatgtatcatgtttcaat |
26733388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 26852689 - 26852646
Alignment:
| Q |
3 |
tataagctaaacatatatatcactgtaagccttttgcgtgctta |
46 |
Q |
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| T |
26852689 |
tataagctaagcatttatatcactgtaaaccttttgcgtgctta |
26852646 |
T |
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Target: scaffold0349 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 17369 - 17307
Alignment:
| Q |
21 |
atcactgtaagccttttgcgtgcttataagttagtggaacgtcaactttgtatcatgtttcaa |
83 |
Q |
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| T |
17369 |
atcactgtaaaccttttgcgtgcttataagttagtggaatgtcaattatgtatcatgtttcaa |
17307 |
T |
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