View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_high_53 (Length: 293)
Name: NF11036_high_53
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_53 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 7324435 - 7324693
Alignment:
| Q |
19 |
aacaaacataaaaatatacataagcaatcatgaacaagcaaacatgaaaatacataaaataagaacaaacacactttagaattgaataaggtgcaattaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7324435 |
aacaaacataaaaatatacataagcaagcatgaacaagcaaacatgaaaatacataaaataagaacaaacacactttagaattgaataaggtgcaattaa |
7324534 |
T |
|
| Q |
119 |
ctgagtaactaaccttgataatgatatcgattacacatatcctcaatagtgttaagaacaatgatgtcatgatcaatggcaataacccttagaccagcag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7324535 |
ctgagtaactaaccttgataatgatatcgattacacatatcctcaatagtgttaagaacaatgatgtcatgatcaatggcaataacccttagaccagcag |
7324634 |
T |
|
| Q |
219 |
ggaatgatgggttgtcaacgaaacgggccattacgatttatgaaaagaagactggaaac |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7324635 |
ggaatgatgggttgtcaacgaaacgggccattacgatttatgaaaagaagactggaaac |
7324693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 7243839 - 7243694
Alignment:
| Q |
96 |
agaattgaataaggtgcaattaactgagtaactaaccttgataatgatatcgattacacatatcctcaatagtgttaagaacaatgatgtcatgatcaat |
195 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7243839 |
agaattgaataaggtgcaattaacaaagtgactaaccttgataatggaatcgattacacatatcctcaatagtgttaagaacagtgatgtcatgatcaat |
7243740 |
T |
|
| Q |
196 |
ggcaataacccttagaccagcagggaatgatgggttgtcaacgaaa |
241 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
7243739 |
agcaataaccttgagaccagcagggaatgatgggttgtcaatgaaa |
7243694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 51 - 235
Target Start/End: Original strand, 7317684 - 7317869
Alignment:
| Q |
51 |
aacaagcaaacatgaaaatacataaaa-taagaacaaacacactttagaattgaataaggtgcaattaactgagtaactaaccttgataatgatatcgat |
149 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||||| | | ||||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
7317684 |
aacaaacaaacatgaaaaaacataaaagtaagaacatagaaactttagaattgaataatgtgcaattaactaagtaacaaaccttggtaatgatatcgat |
7317783 |
T |
|
| Q |
150 |
tacacatatcctcaatagtgttaagaacaatgatgtcatgatcaatggcaataacccttagaccagcagggaatgatgggttgtca |
235 |
Q |
| |
|
||||||| |||||||||| ||| || | | |||||||||||||||| ||||||||| | ||||| || |||||||||||||||||| |
|
|
| T |
7317784 |
tacacatctcctcaatagagttgaggaaagtgatgtcatgatcaattgcaataaccttgagaccggctgggaatgatgggttgtca |
7317869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 8162044 - 8161916
Alignment:
| Q |
122 |
agtaactaaccttgataatgatatcgattacacatatcctcaatagtgttaagaacaatgatgtcatgatcaatggcaataacccttagaccagcaggga |
221 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||| || | ||||| | | |||||||||||||||| |||| ||| ||||| | |||| |
|
|
| T |
8162044 |
agtacctaaccttgataattgcatcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggacctagagaccttctggga |
8161945 |
T |
|
| Q |
222 |
atgatgggttgtcaacgaaacgggccatt |
250 |
Q |
| |
|
||||||| ||||||| |||| ||| |||| |
|
|
| T |
8161944 |
atgatggtttgtcaatgaaaagggtcatt |
8161916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 22766536 - 22766687
Alignment:
| Q |
101 |
tgaataaggtgcaattaactgagtaactaaccttgataatgatatcgattacacatatcctcaatagtgttaagaacaatgatgtcatgatcaatggcaa |
200 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||| ||||||||||||| |||||||| |||||||| | | || ||||||||||||| |||| |
|
|
| T |
22766536 |
tgaataaggtgtaatttaccaagtaactaaccttgataatgacatcgattacacatctcctcaatggtgttaaggaaagtggtgtcatgatcaattgcaa |
22766635 |
T |
|
| Q |
201 |
taacccttagaccagcagggaatgatgggttgtcaacgaaacgggccattac |
252 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
22766636 |
taacgttgagaccatcagggaatgatgggttgtcgatgaaaacggccattac |
22766687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University