View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_60 (Length: 267)
Name: NF11036_high_60
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 5489186 - 5489414
Alignment:
| Q |
23 |
tatatatatgcaatcatctaaagctattgtgctcataaaaccatatgatatcctctagtgggacaatggttatcacaaaagtatttggatattttgtcat |
122 |
Q |
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| T |
5489186 |
tatatatatgcaatcatctaaacctcttgtgctcataaaaccatatgatatcctctggtgggacaatggaaatcacaaaaatatttgcatattttgtcat |
5489285 |
T |
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| Q |
123 |
tgccctcttctttctttttgcatcaacccaatacgtagtgactagccgtaataatagcactctttgcattaaggaagagagaatggcactccttaacatc |
222 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
5489286 |
tgccctcttctttctttttgcatcaacccagtacttagtgactagccttaatgttagtactctttgcattaaggaagagagagtggcactccttaaaatc |
5489385 |
T |
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| Q |
223 |
aaaaaagatctcaatgatccttccaattg |
251 |
Q |
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|||||||||||||| |||||||| ||||| |
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| T |
5489386 |
aaaaaagatctcaaggatccttcaaattg |
5489414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 5494949 - 5495196
Alignment:
| Q |
1 |
aaacaatactgtcactttgttctatatatatgcaatcatctaaagctattgtgctcataaaaccatatgatatcctctagtgggacaatggttatcacaa |
100 |
Q |
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| T |
5494949 |
aaacaatccggtcactttgttctatatatatgcaatcatctaaacctctcgtggtcataaaaccatatgatatcctct---gggacaatggcaatcacaa |
5495045 |
T |
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| Q |
101 |
aagtatttggatattttgtcattgccctcttctttctttttgcatcaacccaatacgtagtgactagccgtaataatagcactctttgcattaaggaaga |
200 |
Q |
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| T |
5495046 |
aaatatatgaatattttgtcatttccctcttctttctttttgcatcaacccaatatgtagtgagtagcaataatgttagcactctttgcattaaggaaga |
5495145 |
T |
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| Q |
201 |
gagaatggcactccttaacatcaaaaaagatctcaatgatccttccaattg |
251 |
Q |
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|||| ||||||||||||| ||||||||||||||||| ||||| |||||||| |
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| T |
5495146 |
gagagtggcactccttaaaatcaaaaaagatctcaaagatccatccaattg |
5495196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 5476169 - 5476293
Alignment:
| Q |
127 |
ctcttctttctttttgcatcaacccaatacgtagtgactagccgtaataatagcactctttgcattaaggaagagagaatggcactccttaacatcaaaa |
226 |
Q |
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| T |
5476169 |
ctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaa |
5476268 |
T |
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| Q |
227 |
aagatctcaatgatccttccaattg |
251 |
Q |
| |
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| T |
5476269 |
aagatctcaatgatccttccaattg |
5476293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 5481256 - 5481380
Alignment:
| Q |
127 |
ctcttctttctttttgcatcaacccaatacgtagtgactagccgtaataatagcactctttgcattaaggaagagagaatggcactccttaacatcaaaa |
226 |
Q |
| |
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|||||||| |||||||||||||| |||| | ||| | |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5481256 |
ctcttcttcctttttgcatcaactcaatgtgaagttaaaagccttaatgttagcactctttgcattaaggaagagagaatggcactccttaacgtcaaaa |
5481355 |
T |
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| Q |
227 |
aagatctcaatgatccttccaattg |
251 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
5481356 |
aagatctcaatgatccttacaattg |
5481380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 5484109 - 5484229
Alignment:
| Q |
131 |
tctttctttttgcatcaacccaatacgtagtgactagccgtaataatagcactctttgcattaaggaagagagaatggcactccttaacatcaaaaaaga |
230 |
Q |
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||||| ||||||||||| |||| ||| ||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
5484109 |
tctttatttttgcatcatcccagtacttagtggatagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaataga |
5484208 |
T |
|
| Q |
231 |
tctcaatgatccttccaattg |
251 |
Q |
| |
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|||||| ||||| |||||||| |
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| T |
5484209 |
tctcaaagatccatccaattg |
5484229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 5466482 - 5466627
Alignment:
| Q |
106 |
tttggatattttgtcattgccctcttctttctttttgcatcaacccaatacgtagtgactagccgtaataatagcactctttgcattaaggaagagagaa |
205 |
Q |
| |
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|||||||||| ||| ||||| ||| ||||||||||||||||||| || | ||||| | |||| | || |||||||||||||||||| |||||||| |
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| T |
5466482 |
tttggatattatgttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcactctttgcattaaagaagagaggg |
5466581 |
T |
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| Q |
206 |
tggcactccttaacatcaaaaaagatctcaatgatccttccaattg |
251 |
Q |
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|||||||||||||||| ||||||||||| || |||||||||||||| |
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| T |
5466582 |
tggcactccttaacataaaaaaagatctgaacgatccttccaattg |
5466627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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