View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_67 (Length: 250)
Name: NF11036_high_67
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 51270913 - 51271155
Alignment:
| Q |
1 |
aattattttaccttggcccttcctgcaaggtcataattgaatacgtatattaaatgaaattaatctaaaataaaatcattgtttattgaaataatagggt |
100 |
Q |
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| T |
51270913 |
aattattttaccttggcccttcctgcaaggtcataattgaatacgtatattaaatgaaattaatctaaaataaaatcattgtttattgaaataatagggt |
51271012 |
T |
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| Q |
101 |
tggtcggtttagaataccactggatggaagtccatatggaacattagacgcagcattagacccaaatgaacatgggaaaggcatggacatgtgcagcata |
200 |
Q |
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| T |
51271013 |
tggtcggtttagaataccactggatggaagtccatatggaacattagacgcagcattagacccaaatgaacatgggaaaggcatggacatgtgcagcata |
51271112 |
T |
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| Q |
201 |
aaccctaattatctagggttgaagtacagatatgcctatgctt |
243 |
Q |
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| T |
51271113 |
aaccctaattatctagggttgaagtacagatatgcctatgctt |
51271155 |
T |
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Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 50 - 243
Target Start/End: Original strand, 23309060 - 23309248
Alignment:
| Q |
50 |
ttaaatgaaattaatctaaaataaaatcattgtttattgaaataatagggttggtcggtttagaataccactggatggaagtccatatggaacattagac |
149 |
Q |
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| T |
23309060 |
ttaaatgaaattaatctaaa-----atcattgtttattgaaataatagggttggtcggttcagaataccactagatggaagtccatatggaacattagaa |
23309154 |
T |
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| Q |
150 |
gcagcattagacccaaatgaacatgggaaaggcatggacatgtgcagcataaaccctaattatctagggttgaagtacagatatgcctatgctt |
243 |
Q |
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| T |
23309155 |
gcagaattagacccaaatgaacatgggaaaggcatggacatgtgcagcataaaccctaattatttagggttgaagtacagatatgcctatgctt |
23309248 |
T |
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