View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_69 (Length: 250)
Name: NF11036_high_69
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39051706 - 39051487
Alignment:
| Q |
1 |
aaagatttagaattttattcgccaagatttgctaaaattgtaaaaatgcttcttaaattgaactgtgtctatcaaaatagtaaatccatttatttttcca |
100 |
Q |
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| T |
39051706 |
aaagatttagaattttattcgccaagatttgctaaaattgtaaaaatgcttcttaaattgaactgtgtctatcaaaatagtaaatccatttatttttcca |
39051607 |
T |
|
| Q |
101 |
ttagagtggatgaagtgatatgtgaaccgcttacgtgacaatctactatatgttaatgcaatattagtatattacgtaaccattttgtccaaaataattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39051606 |
ttagagtggatgaagtgatatgtgaaccgcttacgtgacaatctac--tatgttaatgcaatattagtatattacgtaaccattttgtccaaaataattt |
39051509 |
T |
|
| Q |
201 |
tagagttcatccaacattagtc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39051508 |
tagagttcatccaacattagtc |
39051487 |
T |
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