View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_high_72 (Length: 245)
Name: NF11036_high_72
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_72 |
 | |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0012 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29471144 - 29471369
Alignment:
| Q |
1 |
acagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29471144 |
acagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatcaatgtaactgtggagttg |
29471243 |
T |
|
| Q |
101 |
tttatttatcgaatagagctgctgtgatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaata |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29471244 |
tttatttatcgaatagagctgctgtgatgtcaaaactggctgaatttaccatccaggctgaagaaaaagtgagcccaatgcaatcttcacatgtagaata |
29471343 |
T |
|
| Q |
201 |
tatttgtctgaggaactgcaaatttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
29471344 |
tatttgtctgaggaactgcaaatttt |
29471369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 29663666 - 29663471
Alignment:
| Q |
11 |
acttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttatc |
110 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||| | |
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|
| T |
29663666 |
acttggaatatactcccataaaagaattgccgtttccatttcaaaatcttactctgcctaaaa---tatatccatgtaactgtggatttgtttccttacc |
29663570 |
T |
|
| Q |
111 |
gaatagagctgctgtgatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtct |
209 |
Q |
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| ||| | || |||||||||||||| |||| |||||||||||||||| |||||| || ||| || ||||||| ||| ||||||||||||||||| |
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| T |
29663569 |
aactagtaattatgcgatgtcaaaactggtggaatgtaccatccaggctgaacaaaaagtgatcccgatccaatctttacacgtagaatatatttgtct |
29663471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 29690110 - 29689898
Alignment:
| Q |
10 |
cacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttat |
109 |
Q |
| |
|
||||||||| | |||| |||| ||||||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||| | || || |
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|
| T |
29690110 |
cacttggatgaaactcccataaaagaattaccgtttccatttcaaaatcttacacagccccaaacatattatccatgtaactgtggacattcttgctttc |
29690011 |
T |
|
| Q |
110 |
cgaatagagctgctgtgatgtcaaaactggctgaa-tctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtc |
208 |
Q |
| |
|
| ||||||||| || ||||||||||| |||||||| ||| |||| ||||| || |||||| ||||||||| ||||||||||||||| | ||||||||| |
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| T |
29690010 |
caaatagagcttctttgatgtcaaaaatggctgaactct-ccattcaggccgaggaaaaaatgagcccaatacaatcttcacatgtaaagtatatttgtg |
29689912 |
T |
|
| Q |
209 |
tgaggaactgcaaa |
222 |
Q |
| |
|
||| ||| |||||| |
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|
| T |
29689911 |
tgaagaaatgcaaa |
29689898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 29768092 - 29767880
Alignment:
| Q |
10 |
cacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttat |
109 |
Q |
| |
|
||||||||| | |||| |||| ||||||| || |||| |||||||| |||||||| |||||||| ||| | ||||| |||||||| || ||| |
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| T |
29768092 |
cacttggatgaaactcccataaaagaatttccatttcaatttcaaactcttactcagcctcaaagatttgtttcatgtgactgtggatatggccgcttac |
29767993 |
T |
|
| Q |
110 |
cgaatagagctgctgtgatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtct |
209 |
Q |
| |
|
| ||||||| || |||||||||| || ||||||| ||||||| |||||||||||||| || || ||||||||||||||||||| | ||||||||| | |
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| T |
29767992 |
caaatagagatgttgtgatgtcagaatcggctgaacttaccatcaaggctgaagaaaaaatgaaccaaatgcaatcttcacatgtaaagtatatttgtgt |
29767893 |
T |
|
| Q |
210 |
gaggaactgcaaa |
222 |
Q |
| |
|
|||||||||||| |
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|
| T |
29767892 |
caggaactgcaaa |
29767880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 28488414 - 28488347
Alignment:
| Q |
27 |
catacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtg |
94 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||| | || ||||||||| ||||||||||||||| |
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|
| T |
28488414 |
catagaagagttgccatttccatttcaaaatcttacccagcttcaaacatttcatccatgtaactgtg |
28488347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 29800826 - 29800759
Alignment:
| Q |
27 |
catacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtg |
94 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||| | || ||||||||| ||||||||||||||| |
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|
| T |
29800826 |
catagaagagttgccatttccatttcaaaatcttacccagcttcaaacatttcatccatgtaactgtg |
29800759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 28488285 - 28488205
Alignment:
| Q |
126 |
gatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttg |
206 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||||||||||| | | |||| |||||| |||||||| | |||||||| |
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|
| T |
28488285 |
gatgtcaaaagtggctgaatttaccatccagaatgaagaaaaagtgtacgcaatccaatctgcacatgtaaagtatatttg |
28488205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 29800697 - 29800617
Alignment:
| Q |
126 |
gatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttg |
206 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||||||||||| | | |||| |||||| |||||||| | |||||||| |
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|
| T |
29800697 |
gatgtcaaaagtggctgaatttaccatccagaatgaagaaaaagtgtacgcaatccaatctgcacatgtaaagtatatttg |
29800617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 74364 - 74552
Alignment:
| Q |
34 |
gaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttatcgaatagagctgctgtgatgtcaa |
133 |
Q |
| |
|
||||| |||||||||||| |||||| ||||| || || ||||| ||||||||| || |||||| |||||||||| | ||||||| || || |||| |
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|
| T |
74364 |
gaatttccgtttccatttgaaaatcatactctgcttccaacatcatatccatgcaaatgtggaactgtttatttaccaaatagagttgttgcattgtcgc |
74463 |
T |
|
| Q |
134 |
aactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaa |
222 |
Q |
| |
|
|||||||||| || |||| ||| |||| ||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
74464 |
tgctggctgaatttatcatcaagggtgaaagaaaagtgagcccgaagcaatcttcacaagtagaatatatttgtctcaggaactgcaaa |
74552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 618069 - 618264
Alignment:
| Q |
12 |
cttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttatcg |
111 |
Q |
| |
|
||||||| | |||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||| || ||| | |
|
|
| T |
618069 |
cttggatgaaactcccataaaagaattgccgtttccatttcaaaatcttacacaacctcaaacattat------gtaactgtggatatgtctacttacca |
618162 |
T |
|
| Q |
112 |
aatagagctgctgtgatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtctga |
211 |
Q |
| |
|
||||| |||||||| ||||||||||| ||| |||||| |||||| |||| || | |||||||||||||||||||| | |||||||| | | |
|
|
| T |
618163 |
aatag---------gatgtcaagactggctgaatttactatccagaatgaagagaaagtgaacgcaatgcaatcttcacatgtaaagcatatttgtgtca |
618253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 210034 - 209953
Alignment:
| Q |
126 |
gatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgt |
207 |
Q |
| |
|
|||||||| ||||||||||| ||||||| || ||||||||||| || | |||||||||||| ||||||| | ||||||||| |
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|
| T |
210034 |
gatgtcaacactggctgaatttaccatcaagaatgaagaaaaagtgaacacaatgcaatctttacatgtaaagtatatttgt |
209953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 236419 - 236354
Alignment:
| Q |
12 |
cttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacatt |
77 |
Q |
| |
|
||||||| | ||||||||| ||||||||| |||||| ||| ||||||||||||| ||| ||||||| |
|
|
| T |
236419 |
cttggatgaaactctcataaaagaattgctgtttccgttttaaaatcttactccacctgaaacatt |
236354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 210123 - 210083
Alignment:
| Q |
22 |
actctcatacaagaattgccgtttccatttcaaaatcttac |
62 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
210123 |
actcccataaaagaattgccgtttccatttaaaaatcttac |
210083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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