View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_73 (Length: 244)
Name: NF11036_high_73
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_73 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35422191 - 35421967
Alignment:
| Q |
1 |
tatttgatggaagagtaccaaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgagggatttcacccgaaaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35422191 |
tatttgatggaagagtaccaaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgagggatttcacccgaaaaatt |
35422092 |
T |
|
| Q |
101 |
atttgaacccagatttagatatcttaaatttgataacttacccaaggtataaggtatatttccttccaattgatttcttgcaagtgttatattttggagg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35422091 |
atttgaacccagatttagatctcttaaatttgataacttacccaaggtataaggtatatttccttccaattgatttcttgcaagtgttatattttggagg |
35421992 |
T |
|
| Q |
201 |
gatgaaatatttcccaaggaaggtg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
35421991 |
gatgaaatatttcccaaggaaggtg |
35421967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35435536 - 35435312
Alignment:
| Q |
1 |
tatttgatggaagagtaccaaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgagggatttcacccgaaaaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35435536 |
tatttgatggaagagtaccaaataattggttttgcccaaggatgaaaacataaatttttgatagattgtaaagagaatgagggatttcacccgaaaaatt |
35435437 |
T |
|
| Q |
101 |
atttgaacccagatttagatatcttaaatttgataacttacccaaggtataaggtatatttccttccaattgatttcttgcaagtgttatattttggagg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35435436 |
atttgaacccagatttagatctcttaaatttgataacttacccaaggtataaggtatatttccttccaattgatttcttgcaagtgttatattttggagg |
35435337 |
T |
|
| Q |
201 |
gatgaaatatttcccaaggaaggtg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
35435336 |
gatgaaatatttcccaaggaaggtg |
35435312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 35753281 - 35753119
Alignment:
| Q |
60 |
gatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatatcttaaatttgataacttacccaaggtataaggtatat |
159 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||| |||||||| |||| | | || | | |||||| ||| ||||||| ||||||||||| |
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| T |
35753281 |
gatagattgtaaagagaatgaggaatttcacctgacaaatgatttgaactcagagtcaaatctatcaaattttgcaacctacccaaagtataaggtatgg |
35753182 |
T |
|
| Q |
160 |
ttccttccaattgatttcttgcaagtgttatattttggagggatgaaatatttcccaaggaag |
222 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||| |||||| ||||||||||||||||| |||| |
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|
| T |
35753181 |
ttccttccaattgattccttccaagtattaatcgttggagtgatgaaatatttcccaaagaag |
35753119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 35405051 - 35404932
Alignment:
| Q |
57 |
tttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatatcttaaatttgataacttacccaaggtataaggta |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||||||||||| |||| |||||| | ||| |||| ||| ||||||| | |||||||| |
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|
| T |
35405051 |
tttgataggttgtaaagagaatgagggatttcacctgacaaattatttgaactcagagacagatatgtcaaacttgacaacctacccaaagaataaggta |
35404952 |
T |
|
| Q |
157 |
tatttccttccaattgattt |
176 |
Q |
| |
|
| ||||||| || |||||| |
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|
| T |
35404951 |
tgcttccttcaaagtgattt |
35404932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 35374873 - 35374714
Alignment:
| Q |
57 |
tttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatatctt-aaatttgataacttacccaaggtataaggt |
155 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || |||||||||||| ||| | | | || || ||| |||| ||| ||||||| | | ||||| |
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| T |
35374873 |
tttgataggttgtaaagagaatgaggaatttcacctgacaaattatttgaatgtagaatca-acattttcaaacttgacaacatacccaaagaacaaggt |
35374775 |
T |
|
| Q |
156 |
atatttccttccaattgatttcttgcaagtgttatattttggagggatgaaatatttccca |
216 |
Q |
| |
|
|| |||||| ||| |||||| | |||||| |||||||||||| ||||||| |||||||| |
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|
| T |
35374774 |
attcttcctttcaagtgattttgtccaagtgatatattttggagtgatgaaacatttccca |
35374714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 35365330 - 35365173
Alignment:
| Q |
57 |
tttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatatctt-aaatttgataacttacccaaggtataaggt |
155 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| || ||||||||| ||| |||| | ||| || ||| |||| ||||||||||| | || |||| |
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|
| T |
35365330 |
tttgataggttgtaaagtgaatgaggaatttcacctgacaaattatttccacctagataca-ataaattcaaacttgacaacttacccaaagaatcaggt |
35365232 |
T |
|
| Q |
156 |
atatttccttccaattgatttcttgcaagtgttatattttggagggatgaaatatttcc |
214 |
Q |
| |
|
|| ||||||||| |||||| || ||||| |||||||||||| ||||||| |||||| |
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|
| T |
35365231 |
atgcttccttccaggtgattttgtgtaagtgatatattttggagtgatgaaacatttcc |
35365173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 29624844 - 29624978
Alignment:
| Q |
57 |
tttgatagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatatcttaaatttgataacttacccaaggtataaggta |
156 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||| || || ||||| ||| ||| ||| ||| || ||||||||| |||||||| || | |||||||| |
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| T |
29624844 |
tttgataggttgtaaatagaatgtgggatttctcctgacaaattgtttaaacatagagacagaaatactaaatttgacaacttacctaaagaataaggta |
29624943 |
T |
|
| Q |
157 |
tatttccttccaattgatttcttgcaagtgttata |
191 |
Q |
| |
|
| ||||||||||| ||||| | ||||||||||||| |
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|
| T |
29624944 |
tgtttccttccaagtgattacgtgcaagtgttata |
29624978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 13563828 - 13563662
Alignment:
| Q |
61 |
atagattgtaaagagaatgagggatttcacccgaaaaattatttgaacccagatttagatatctt-aaatttgataacttacccaaggtataaggtatat |
159 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| || |||||||||||||| |||| | ||| ||| || |||| ||| ||||||| | ||||||||| |
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|
| T |
13563828 |
ataggttgtaaagagaatgaggaatttcacctgacaaattatttgaacctggattca-atagcttcaagcttgacaacctacccaaagaataaggtatgc |
13563730 |
T |
|
| Q |
160 |
ttccttcc--aattgatttcttgcaagtgttatattttggagggatgaaatatttcccaaggaaggtg |
225 |
Q |
| |
|
|||||||| || ||||| ||||| |||||| | |||||| || |||||||| ||||||||||||| |
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|
| T |
13563729 |
ttccttccaaaagtgattatatgcaaatgttatgtgttggagagacgaaatattccccaaggaaggtg |
13563662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 30633760 - 30633713
Alignment:
| Q |
57 |
tttgatagattgtaaagagaatgagggatttcacccgaaaaattattt |
104 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
30633760 |
tttgataggttgtagagagaatgagggatttcacctgacaaattattt |
30633713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 30661489 - 30661442
Alignment:
| Q |
57 |
tttgatagattgtaaagagaatgagggatttcacccgaaaaattattt |
104 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
30661489 |
tttgataggttgtagagagaatgagggatttcacctgacaaattattt |
30661442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 30670169 - 30670122
Alignment:
| Q |
57 |
tttgatagattgtaaagagaatgagggatttcacccgaaaaattattt |
104 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
30670169 |
tttgataggttgtagagagaatgagggatttcacctgacaaattattt |
30670122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 10411690 - 10411737
Alignment:
| Q |
57 |
tttgatagattgtaaagagaatgagggatttcacccgaaaaattattt |
104 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
10411690 |
tttgataggttgtagagagaatgagggatttcacctgacaaattattt |
10411737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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