View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_high_74 (Length: 244)

Name: NF11036_high_74
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_high_74
NF11036_high_74
[»] chr5 (17 HSPs)
chr5 (1-226)||(8529434-8529659)
chr5 (1-223)||(8536001-8536223)
chr5 (1-223)||(9074122-9074344)
chr5 (1-199)||(1599684-1599882)
chr5 (4-122)||(8547470-8547588)
chr5 (1-114)||(2844435-2844548)
chr5 (1-114)||(2873878-2873991)
chr5 (1-194)||(2856268-2856464)
chr5 (1-199)||(2904384-2904585)
chr5 (142-200)||(8637396-8637454)
chr5 (151-194)||(2844594-2844637)
chr5 (1-120)||(8644833-8644952)
chr5 (154-194)||(8644747-8644787)
chr5 (151-194)||(2874031-2874074)
chr5 (161-200)||(11354043-11354082)
chr5 (161-200)||(11373311-11373350)
chr5 (67-111)||(9004088-9004132)
[»] chr4 (1 HSPs)
chr4 (1-224)||(9443597-9443820)
[»] chr7 (2 HSPs)
chr7 (1-223)||(48361236-48361458)
chr7 (8-219)||(35780317-35780544)
[»] chr6 (1 HSPs)
chr6 (1-123)||(16716982-16717104)
[»] scaffold0627 (1 HSPs)
scaffold0627 (9-114)||(5293-5398)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8529659 - 8529434
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8529659 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtcacgggggagttca 8529560  T
Q  101 taagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529559 taagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 8529460  T
Q  201 cgtgtggataagacatgttaaacatg 226  Q
    ||||||||||||||||||||||||||    
T  8529459 cgtgtggataagacatgttaaacatg 8529434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8536223 - 8536001
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  8536223 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcactggggagttta 8536124  T
Q  101 taagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 200  Q
    |||||||||||||||||| | |  ||| || ||| ||||||| || ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  8536123 taagacttcctgaatctattgcggatcaaaatcgggtaagaaggctaggacaagctggttttggtttccaacctaaaactaatgaatataaggtgataaa 8536024  T
Q  201 cgtgtggataagacatgttaaac 223  Q
    | ||||| | |||||||||||||    
T  8536023 catgtgggtgagacatgttaaac 8536001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9074122 - 9074344
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||   |||||||| | ||||||||||||||||||||| ||||||||||    
T  9074122 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgcaacccagtcacaggggagttca 9074221  T
Q  101 taagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 200  Q
    |||||||||||||| |||| || ||||||||||| |||||||||  ||| |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  9074222 taagacttcctgaagctaccacgaatcgaactcgggtaagaatggtaggacaagttggttttggattccaacctaatactaatgaatataaggtaataag 9074321  T
Q  201 cgtgtggataagacatgttaaac 223  Q
      ||||||||||||||| |||||    
T  9074322 aatgtggataagacatggtaaac 9074344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 1599684 - 1599882
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  1599684 aagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaacccaatcactggggagttca 1599783  T
Q  101 taagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataa 199  Q
    |||||||||||||||||||  | |||| |||||| ||| ||| |||||| | ||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  1599784 taagacttcctgaatctaccgcgaatcaaactcgggtaggaaggcaaggacgagctgcttttggtttccaacctaaaactaatgaatataaggtgataa 1599882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 8547470 - 8547588
Alignment:
Q  4 tttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataa 103  Q
    |||||||||||||||||||||| ||| || |||||||||||||| ||| ||   |||||||| |||||||||||||| ||| |||| |||||||||||||    
T  8547470 tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa 8547569  T
Q  104 gacttcctgaatctactac 122  Q
    |||||| |||| |||||||    
T  8547570 gacttcttgaagctactac 8547588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 2844435 - 2844548
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| ||||    
T  2844435 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca 2844534  T
Q  101 taagacttcctgaa 114  Q
     || ||||||||||    
T  2844535 caatacttcctgaa 2844548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 2873878 - 2873991
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| ||||    
T  2873878 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca 2873977  T
Q  101 taagacttcctgaa 114  Q
     || ||||||||||    
T  2873978 caatacttcctgaa 2873991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 2856268 - 2856464
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| || |    
T  2856268 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattta 2856367  T
Q  101 taagacttcctgaatctactacaaat-cgaactcgagtaagaatgcaaggt--caagctggttttggattccaacctaaaactaatgaatataaggt 194  Q
     || ||||||||||  |||||| | | |  ||| |  ||| | |||  ||   |||||||||||||| |||||||| ||||||||||||||||||||    
T  2856368 caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtacaagctggttttggtttccaacccaaaactaatgaatataaggt 2856464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 2904384 - 2904585
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  |||||   |||| ||| |||| ||| ||||||||||| ||| |||| ||||    
T  2904384 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaacccagtaacgagggaattca 2904483  T
Q  101 taagacttcctgaatctactac-aaatcgaactcgagtaagaatgcaagg--tcaagctggttttggattccaacctaaaactaatgaatataaggtaat 197  Q
     || ||||||||||  |||||| |  ||  ||| |  ||| | |||  ||   |||||||||||||| |||||||| |||||||||||||||||||| ||    
T  2904484 caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtgcaagctggttttggtttccaacccaaaactaatgaatataaggtgat 2904583  T
Q  198 aa 199  Q
    ||    
T  2904584 aa 2904585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 8637454 - 8637396
Alignment:
Q  142 atgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 200  Q
    |||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  8637454 atgcgaggacaagttggttttggtttccaacctaaaactaatgaatataaggtgataag 8637396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 2844594 - 2844637
Alignment:
Q  151 caagctggttttggattccaacctaaaactaatgaatataaggt 194  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  2844594 caagctggttttggtttccaacccaaaactaatgaatataaggt 2844637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 8644952 - 8644833
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    ||||||| | ||||||||||||||||||| || |||||||||  | | |||| |   ||||  |||||||| || ||||| |||||||| |||||||| |    
T  8644952 aagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagttta 8644853  T
Q  101 taagacttcctgaatctact 120  Q
    ||||||||||| || |||||    
T  8644852 taagacttcctaaagctact 8644833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 8644787 - 8644747
Alignment:
Q  154 gctggttttggattccaacctaaaactaatgaatataaggt 194  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  8644787 gctgcttttggcttccaacctaaaactaatgaatataaggt 8644747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 2874031 - 2874074
Alignment:
Q  151 caagctggttttggattccaacctaaaactaatgaatataaggt 194  Q
    |||||||||||| | |||||||| ||||||||||||||||||||    
T  2874031 caagctggttttagtttccaacccaaaactaatgaatataaggt 2874074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 11354043 - 11354082
Alignment:
Q  161 ttggattccaacctaaaactaatgaatataaggtaataag 200  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  11354043 ttggcttccaacctaaaactaatgaatataaggtgataag 11354082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 11373350 - 11373311
Alignment:
Q  161 ttggattccaacctaaaactaatgaatataaggtaataag 200  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  11373350 ttggcttccaacctaaaactaatgaatataaggtgataag 11373311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 9004132 - 9004088
Alignment:
Q  67 ttagtgatctgcaacccagtcacgggggagttcataagacttcct 111  Q
    |||||| | |||||||||||||| ||||| |||||||||||||||    
T  9004132 ttagtggtatgcaacccagtcactggggaattcataagacttcct 9004088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9443820 - 9443597
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9443820 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtcacgggggagttca 9443721  T
Q  101 taagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443720 taagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 9443621  T
Q  201 cgtgtggataagacatgttaaaca 224  Q
    ||||||||||||||||||||||||    
T  9443620 cgtgtggataagacatgttaaaca 9443597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48361236 - 48361458
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  48361236 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgcaacccagtcacaggggagttca 48361335  T
Q  101 taagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 200  Q
    |||||||||||||||||||| |  |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  48361336 taagacttcctgaatctactgcgtatcgaactcgggtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaatataaggtgataaa 48361435  T
Q  201 cgtgtggataagacatgttaaac 223  Q
    | ||||| | |||||||||||||    
T  48361436 catgtgggtgagacatgttaaac 48361458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 35780544 - 35780317
Alignment:
Q  8 atattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaa-cccattagtgatctgcaacccagtcacgggggagttcataagac 106  Q
    ||||||| ||||||||||||||||| |||||||||||| | |||| |   | ||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  35780544 atattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagac 35780445  T
Q  107 ttcctgaatctactacaaatc------ga------ac---tcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataa 191  Q
    |||||||| ||||||| | ||      ||      ||   |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  35780444 ttcctgaagctactacgactcctttaagattaaatacggatcgagtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaatataa 35780345  T
Q  192 ggtaataagcgtgtggataagacatgtt 219  Q
    ||| ||||   | |||||||||||||||    
T  35780344 ggtgataaaaatatggataagacatgtt 35780317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16717104 - 16716982
Alignment:
Q  1 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 100  Q
    |||||| ||||||||||||| || ||||| || || ||||||||||| ||| ||  |||||||||  ||||||||||||||||| ||| |||||| ||||    
T  16717104 aagtttaatattgtgaattcatgtaatggcttgctatgtttgtctgaaccaactactggaaaccctatagtgatctgcaacccattcatgggggaattca 16717005  T
Q  101 taagacttcctgaatctactaca 123  Q
    |||||||||||||| ||||||||    
T  16717004 taagacttcctgaaactactaca 16716982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 5398 - 5293
Alignment:
Q  9 tattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataagactt 108  Q
    |||||||||||| || ||||| || || ||||||||| | ||| ||   |||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  5398 tattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagactt 5299  T
Q  109 cctgaa 114  Q
    ||||||    
T  5298 cctgaa 5293  T

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