View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_79 (Length: 242)
Name: NF11036_high_79
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_79 |
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Alignment Details
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 20336298 - 20336367
Alignment:
| Q |
10 |
ggacatcaagagaaaacatcgacatttcaattggattgacaccccattgagattgcttatcctacgccgc |
79 |
Q |
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| T |
20336298 |
ggacatcaagagaaaacatcgacattccaattaaattgacaccccgttgagattgcttatcctacgccgc |
20336367 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 20336482 - 20336529
Alignment:
| Q |
195 |
gtgatagttaggcaaaccaaagccgtccctaaagaaatccacacaaat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20336482 |
gtgatagttaggcaaaccaaagccgtccctaaagaaatccacacaaat |
20336529 |
T |
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