View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_high_82 (Length: 239)

Name: NF11036_high_82
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_high_82
NF11036_high_82
[»] chr7 (17 HSPs)
chr7 (1-182)||(29984240-29984418)
chr7 (175-225)||(29983184-29983234)
chr7 (133-229)||(18561222-18561317)
chr7 (50-229)||(11542790-11542972)
chr7 (50-229)||(15152658-15152840)
chr7 (50-229)||(29327999-29328181)
chr7 (167-229)||(18257772-18257834)
chr7 (102-196)||(10669043-10669137)
chr7 (167-229)||(10235377-10235439)
chr7 (167-229)||(11535992-11536054)
chr7 (167-229)||(12751041-12751103)
chr7 (179-229)||(12738751-12738801)
chr7 (179-225)||(47833899-47833945)
chr7 (101-189)||(18139478-18139566)
chr7 (101-189)||(30254212-30254300)
chr7 (152-196)||(19393616-19393659)
chr7 (101-196)||(41681108-41681203)
[»] scaffold0390 (2 HSPs)
scaffold0390 (50-229)||(6744-6926)
scaffold0390 (167-229)||(13880-13942)
[»] scaffold0234 (2 HSPs)
scaffold0234 (50-229)||(2131-2313)
scaffold0234 (50-229)||(11022-11204)
[»] scaffold0220 (1 HSPs)
scaffold0220 (50-229)||(18503-18685)
[»] chr8 (13 HSPs)
chr8 (50-229)||(21940880-21941062)
chr8 (133-229)||(24642864-24642959)
chr8 (167-229)||(6094338-6094400)
chr8 (151-217)||(10920427-10920493)
chr8 (151-223)||(29645575-29645647)
chr8 (50-226)||(22171705-22171884)
chr8 (169-224)||(2375231-2375286)
chr8 (50-220)||(15326422-15326595)
chr8 (50-220)||(15506791-15506964)
chr8 (101-189)||(21916750-21916838)
chr8 (101-196)||(6430953-6431048)
chr8 (101-196)||(22659634-22659729)
chr8 (101-196)||(26240551-26240646)
[»] chr6 (12 HSPs)
chr6 (50-229)||(17684279-17684461)
chr6 (50-229)||(27381062-27381244)
chr6 (50-229)||(27471445-27471627)
chr6 (167-229)||(11651938-11652000)
chr6 (50-229)||(188787-188969)
chr6 (50-229)||(17691250-17691432)
chr6 (50-229)||(29309105-29309287)
chr6 (50-229)||(29316065-29316247)
chr6 (174-229)||(16566257-16566312)
chr6 (167-229)||(16394375-16394437)
chr6 (101-189)||(27508487-27508575)
chr6 (101-189)||(27528073-27528161)
[»] chr5 (12 HSPs)
chr5 (50-229)||(24695276-24695458)
chr5 (167-229)||(19707148-19707210)
chr5 (167-229)||(19714428-19714490)
chr5 (167-229)||(39538803-39538865)
chr5 (133-229)||(17285645-17285740)
chr5 (96-223)||(17298758-17298885)
chr5 (167-229)||(22546946-22547008)
chr5 (54-224)||(18806850-18807021)
chr5 (167-196)||(9811943-9811972)
chr5 (167-196)||(12704084-12704113)
chr5 (167-196)||(12765200-12765229)
chr5 (50-217)||(18569671-18569841)
[»] chr4 (23 HSPs)
chr4 (50-229)||(18262427-18262609)
chr4 (50-229)||(18269288-18269470)
chr4 (50-229)||(55612898-55613080)
chr4 (167-229)||(4426534-4426596)
chr4 (167-229)||(10628342-10628404)
chr4 (50-229)||(8858382-8858564)
chr4 (50-229)||(19926570-19926752)
chr4 (50-229)||(26963855-26964037)
chr4 (50-229)||(26970678-26970860)
chr4 (50-229)||(28392944-28393126)
chr4 (50-195)||(10677392-10677540)
chr4 (50-195)||(10891032-10891180)
chr4 (167-229)||(868812-868874)
chr4 (167-229)||(5707535-5707597)
chr4 (167-229)||(5714163-5714225)
chr4 (167-229)||(10621263-10621325)
chr4 (50-225)||(5667937-5668115)
chr4 (167-229)||(8845418-8845480)
chr4 (167-225)||(35223779-35223837)
chr4 (167-229)||(56516271-56516333)
chr4 (134-217)||(34777893-34777975)
chr4 (171-225)||(20311511-20311565)
chr4 (101-189)||(3369163-3369251)
[»] chr3 (24 HSPs)
chr3 (50-229)||(6110279-6110461)
chr3 (50-229)||(8490710-8490892)
chr3 (50-229)||(15600694-15600876)
chr3 (50-229)||(15607239-15607421)
chr3 (50-229)||(16482293-16482475)
chr3 (50-229)||(18522878-18523060)
chr3 (167-229)||(10572522-10572584)
chr3 (167-229)||(10579285-10579347)
chr3 (167-229)||(13211517-13211579)
chr3 (167-229)||(13248822-13248884)
chr3 (167-229)||(13517026-13517088)
chr3 (53-229)||(17199997-17200176)
chr3 (167-229)||(18520190-18520252)
chr3 (50-229)||(32056709-32056892)
chr3 (171-229)||(1647455-1647513)
chr3 (167-229)||(15342149-15342211)
chr3 (167-229)||(15357516-15357578)
chr3 (167-229)||(17781048-17781110)
chr3 (164-225)||(28953965-28954026)
chr3 (167-226)||(29925189-29925248)
chr3 (167-226)||(29974342-29974401)
chr3 (50-229)||(17136574-17136750)
chr3 (96-223)||(32280313-32280441)
chr3 (154-223)||(20522066-20522135)
[»] chr2 (5 HSPs)
chr2 (50-229)||(18796721-18796903)
chr2 (133-225)||(18620023-18620114)
chr2 (50-229)||(21330058-21330240)
chr2 (167-225)||(18851989-18852047)
chr2 (101-196)||(24229355-24229450)
[»] chr1 (11 HSPs)
chr1 (50-229)||(18252245-18252427)
chr1 (50-229)||(18532324-18532506)
chr1 (133-229)||(3855816-3855911)
chr1 (167-229)||(21171163-21171225)
chr1 (167-229)||(27131339-27131401)
chr1 (151-225)||(27277472-27277545)
chr1 (133-229)||(36816530-36816625)
chr1 (167-229)||(27310507-27310569)
chr1 (167-225)||(23507119-23507177)
chr1 (50-229)||(16358845-16359027)
chr1 (135-196)||(51997346-51997406)
[»] scaffold0433 (1 HSPs)
scaffold0433 (167-229)||(7322-7384)
[»] scaffold0186 (1 HSPs)
scaffold0186 (50-229)||(25800-25982)
[»] scaffold0136 (1 HSPs)
scaffold0136 (96-195)||(8799-8898)
[»] scaffold0063 (1 HSPs)
scaffold0063 (167-229)||(5744-5806)
[»] scaffold0376 (1 HSPs)
scaffold0376 (167-196)||(11736-11765)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 29984418 - 29984240
Alignment:
Q  1 ttttttcggacaatgtttgaatgcctgtaaaatacttgactcataaagatagggtacatggtggttttaagttgaagggtgacatgcatcacttccacta 100  Q
    |||||||||||||| |||||||| || |||||||||||||||||||   |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  29984418 ttttttcggacaatatttgaatgactataaaatacttgactcataa---tagggtacatggtggtttcaagttgaagggtgatatgcatcacttccacta 29984322  T
Q  101 tgagaatatcttatcacattacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaat 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29984321 tgagaatatcttatcacattacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaat 29984240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 29983234 - 29983184
Alignment:
Q  175 ctcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29983234 ctcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 29983184  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 18561317 - 18561222
Alignment:
Q  133 atgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||||| | ||||||||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18561317 atgtagtattctcatagagggtcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18561222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 11542790 - 11542972
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaac--tcacaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || |||||||  ||||||||||||||||||| |||  || || |||  | || |||||||||||||    
T  11542790 tagggtacatagtggtttcaggtcgaagggtggaatacatcactatcactatgagaatatcttatgacacttttcataacatttactatgtagtattctc 11542889  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | | | |||||||||||||||||||||||    
T  11542890 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagactagataactctttatccatgatctgtg 11542972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 15152840 - 15152658
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  15152840 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 15152741  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  15152740 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 15152658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 29328181 - 29327999
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  29328181 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 29328082  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  29328081 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 29327999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 18257772 - 18257834
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18257772 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18257834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 10669043 - 10669137
Alignment:
Q  102 gagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgt 196  Q
    ||||||||||||| ||| || || |||| || |||||||||||||   | ||||||||||||||  |||||||||||||||||||||||| |||||    
T  10669043 gagaatatcttatgacaatttcataacttactatgtagtattctcacggtgggtcaatctagtat-aaatattactcctaatatttatacctatgt 10669137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 10235439 - 10235377
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||| |||||||||||||||||||| ||| |  || |||||||||||| ||||||||||    
T  10235439 aaatattattcctaatatttatacatatgggaacacctgataactctttatcaatgatctgtg 10235377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 11535992 - 11536054
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  | |||||| | | | |||||||||||||||||||||||    
T  11535992 aaatattactcctaatatttatatctttgtgaagactggataactctttatccatgatctgtg 11536054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 12751103 - 12751041
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||| |||||||||||  |||| ||| | ||| |||||||||||||||||||||||    
T  12751103 aaatattactcataatatttatatctatgagaagaattgataactctttatccatgatctgtg 12751041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 12738801 - 12738751
Alignment:
Q  179 taatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  12738801 taatatttatatctatgtgaagacttgataactctttatccatgatctgtg 12738751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 47833899 - 47833945
Alignment:
Q  179 taatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    |||||||||||| |||||||||| ||| ||||||||||| |||||||    
T  47833899 taatatttatacctatgtgaaaacttggtaactctttattcatgatc 47833945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 18139478 - 18139566
Alignment:
Q  101 tgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttata 189  Q
    |||||||||||||| ||| || || |||| || |||||||||||||   | ||||||||| | || ||||||||||||||||||||||||    
T  18139478 tgagaatatcttatgacaatttcataacttactatgtagtattctcacagtgggtcaatccaata-caaatattactcctaatatttata 18139566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 30254300 - 30254212
Alignment:
Q  101 tgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttata 189  Q
    |||||||||||||| ||| || || |||| || |||||||||||||   | ||||||||| | || ||||||||||||||||||||||||    
T  30254300 tgagaatatcttatgacaatttcataacttactatgtagtattctcacggtgggtcaatccaata-caaatattactcctaatatttata 30254212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 19393616 - 19393659
Alignment:
Q  152 ggtcaatctagtaacaaatattactcctaatatttatacatatgt 196  Q
    |||||||||||||  |||||||||||||||||||||||| |||||    
T  19393616 ggtcaatctagtat-aaatattactcctaatatttatacctatgt 19393659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 41681108 - 41681203
Alignment:
Q  101 tgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgt 196  Q
    |||||||||||||| ||| || || |||| || |||||||||||||   | ||||||||| ||||  ||||||||||| |||||||||||| |||||    
T  41681108 tgagaatatcttatgacaatttcataacttactatgtagtattctcacggtgggtcaatccagtat-aaatattactcataatatttatacctatgt 41681203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 6744 - 6926
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  6744 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 6843  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  6844 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 6926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 13880 - 13942
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  | |||||| | ||| |||||||||||||||||||||||    
T  13880 aaatattactcctaatatttatatctttgtgaagacttgataactctttatccatgatctgtg 13942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 2131 - 2313
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  2131 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 2230  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  2231 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 2313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 11022 - 11204
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  11022 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 11121  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  11122 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 11204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 18685 - 18503
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  18685 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 18586  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18585 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 21941062 - 21940880
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  21941062 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 21940963  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  21940962 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 21940880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 24642959 - 24642864
Alignment:
Q  133 atgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||||| | |||| |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  24642959 atgtagtattctcatggaggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 24642864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 6094400 - 6094338
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  6094400 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 6094338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 10920493 - 10920427
Alignment:
Q  151 gggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttat 217  Q
    ||||||||  ||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  10920493 gggtcaattcagtaataaatattactcataatatttatacatatgtgaatatttgataactctttat 10920427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 29645647 - 29645575
Alignment:
Q  151 gggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatga 223  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||||| | ||| ||| ||||||| |||||    
T  29645647 gggtcaatctagtaacaaatattactcttaatgtttatatatatgtgaagagttgataaatctttatgcatga 29645575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 22171884 - 22171705
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  22171884 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 22171785  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatct 226  Q
     | | || |||||| | ||  ||||||||||| |||||||||||  |||||||| | ||| ||||||||||||||||||||    
T  22171784 atggcggatcaatccaatat-aaatattactcataatatttatatttatgtgaagacttgataactctttatccatgatct 22171705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 2375286 - 2375231
Alignment:
Q  169 atattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgat 224  Q
    ||||||||| |||||||||||  |||||||||||||| |||||| |||||||||||    
T  2375286 atattactcataatatttatatttatgtgaaaatttgataactcattatccatgat 2375231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 15326595 - 15326422
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  15326595 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 15326496  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatcca 220  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| ||||||||| ||||    
T  15326495 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttctcca 15326422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 15506964 - 15506791
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  15506964 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 15506865  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatcca 220  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| ||||||||| ||||    
T  15506864 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttctcca 15506791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 21916838 - 21916750
Alignment:
Q  101 tgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttata 189  Q
    |||||||||||||| ||| || || |||| ||||||||||||||||   | ||||||||| | ||  |||||||||||||||||||||||    
T  21916838 tgagaatatcttatgacaatttcataacttacaatgtagtattctcacagtgggtcaatccaatat-aaatattactcctaatatttata 21916750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 6431048 - 6430953
Alignment:
Q  101 tgagaatatcttatcacatta-cacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgt 196  Q
    |||||||||||||| ||| |  || |||| || |||||||||||||   | ||||| ||||||||  |||||||||||||||||||||||| |||||    
T  6431048 tgagaatatcttatgacaatctcataacttactatgtagtattctcacggtgggtctatctagtat-aaatattactcctaatatttatacctatgt 6430953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 22659634 - 22659729
Alignment:
Q  101 tgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgt 196  Q
    |||||||||||||| ||| || || |||| || |||||||||||||   | ||||||||| ||||  | |||||||||||||||||||||| |||||    
T  22659634 tgagaatatcttatgacaatttcataacttactatgtagtattctcacggtgggtcaatccagtat-acatattactcctaatatttatacctatgt 22659729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 26240646 - 26240551
Alignment:
Q  101 tgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgt 196  Q
    |||||||||||||| ||| || || |||| || |||||||||||||   | ||||||||| | ||  |||||||||||||||||||||||| |||||    
T  26240646 tgagaatatcttatgacaatttcataacttactatgtagtattctcacggtgggtcaatccaatat-aaatattactcctaatatttatacctatgt 26240551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 17684279 - 17684461
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  17684279 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 17684378  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  17684379 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 17684461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 27381062 - 27381244
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  27381062 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 27381161  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  27381162 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 27381244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 27471445 - 27471627
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  27471445 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 27471544  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  27471545 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 27471627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 11652000 - 11651938
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  11652000 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 11651938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 188787 - 188969
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  188787 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 188886  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||| ||||    
T  188887 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatatgtg 188969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 17691250 - 17691432
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  17691250 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 17691349  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||| ||||    
T  17691350 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatatgtg 17691432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 29309287 - 29309105
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  29309287 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 29309188  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||| ||||    
T  29309187 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatatgtg 29309105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 29316247 - 29316065
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  29316247 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 29316148  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||| ||||    
T  29316147 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatatgtg 29316065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 16566257 - 16566312
Alignment:
Q  174 actcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  16566257 actcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 16566312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 16394375 - 16394437
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| ||||| |||||||||||| ||||    
T  16394375 aaatattactcctaatatttatatctatgtgaagacttgataactgtttatccatgatatgtg 16394437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 27508487 - 27508575
Alignment:
Q  101 tgagaatatcttatcacatta-cacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttata 189  Q
    |||||||||||||| |||||  || |||| || |||||||||||||   | ||||||||| | || ||||||||||||||||||||||||    
T  27508487 tgagaatatcttatgacattttcataacttactatgtagtattctcacagtgggtcaatccaata-caaatattactcctaatatttata 27508575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 27528073 - 27528161
Alignment:
Q  101 tgagaatatcttatcacatta-cacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttata 189  Q
    |||||||||||||| |||||  || |||| || |||||||||||||   | ||||||||| | || ||||||||||||||||||||||||    
T  27528073 tgagaatatcttatgacattttcataacttactatgtagtattctcacagtgggtcaatccaata-caaatattactcctaatatttata 27528161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 24695276 - 24695458
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  24695276 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 24695375  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  24695376 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 24695458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 19707148 - 19707210
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||| ||||||||  |||||||| ||||| |||||||||||||||||||||||    
T  19707148 aaatattactcctagtatttatatctatgtgaagatttgataactctttatccatgatctgtg 19707210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 19714428 - 19714490
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  19714428 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 19714490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 39538865 - 39538803
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  39538865 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 39538803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 17285645 - 17285740
Alignment:
Q  133 atgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||||| ||| ||||||||| | ||  ||||||||||| |||||||||||  ||||| || | ||| ||||||||||||||||| |||||    
T  17285645 atgtagtattctcattgtgggtcaatccaatat-aaatattactcttaatatttatatctatgtaaagacttgataactctttatccatgacctgtg 17285740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 17298758 - 17298885
Alignment:
Q  96 cactatgagaatatcttatcacatt-acacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatat 194  Q
    ||||||||||||| ||||| ||||| ||| ||||  | | ||||||||||| | | ||||||||| | ||  ||||||||||| |||||||||||  |||    
T  17298758 cactatgagaataacttatgacatttacataactttctacgtagtattctcatggtgggtcaatccaatat-aaatattactcttaatatttatatctat 17298856  T
Q  195 gtgaaaatttgttaactctttatccatga 223  Q
    ||||| ||||  |||||||||||||||||    
T  17298857 gtgaagatttaataactctttatccatga 17298885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 22546946 - 22547008
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||| |||||||||||  ||| |||||| ||| |||||||||||||||||| ||||    
T  22546946 aaatattactcataatatttatatctatatgaaaacttgataactctttatccatgatttgtg 22547008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 18806850 - 18807021
Alignment:
Q  54 gtacatggtggttttaagttgaagggtgacatgcatcacttc-cactatgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgag 151  Q
    |||||| ||||||| | |||||||||||  || ||||||||  ||||||||||||| ||||| ||| ||||| ||||  | |||||  |||||| | | |    
T  18806850 gtacatagtggtttcaggttgaagggtggaatacatcacttatcactatgagaataacttatgacagttacaaaactttctatgtatcattctcatggtg 18806949  T
Q  152 ggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgat 224  Q
    | |||||| | ||  ||| |||||| ||||||||||||  |||||||| | ||| ||||||||||||||||||    
T  18806950 gatcaatccaatat-aaacattacttctaatatttatatctatgtgaagacttgataactctttatccatgat 18807021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 9811943 - 9811972
Alignment:
Q  167 aaatattactcctaatatttatacatatgt 196  Q
    ||||||||||||||||||||||||||||||    
T  9811943 aaatattactcctaatatttatacatatgt 9811972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 12704084 - 12704113
Alignment:
Q  167 aaatattactcctaatatttatacatatgt 196  Q
    ||||||||||||||||||||||||||||||    
T  12704084 aaatattactcctaatatttatacatatgt 12704113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 12765200 - 12765229
Alignment:
Q  167 aaatattactcctaatatttatacatatgt 196  Q
    ||||||||||||||||||||||||||||||    
T  12765200 aaatattactcctaatatttatacatatgt 12765229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 217
Target Start/End: Original strand, 18569671 - 18569841
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  |||||||| |||||||||| |||  || || ||||   || |||||||||||||    
T  18569671 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgataatatcttatgacacttttcataacttttactatgtagtattctc 18569770  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttat 217  Q
     | | ||||||||| | ||  |||||||||||||||||||||||  |||||||| | ||| || ||||||||    
T  18569771 atggcgggtcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgatatctctttat 18569841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 18262609 - 18262427
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  18262609 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 18262510  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18262509 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18262427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 18269470 - 18269288
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  18269470 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 18269371  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18269370 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18269288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 55613080 - 55612898
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  55613080 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 55612981  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  55612980 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 55612898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 4426534 - 4426596
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  4426534 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 4426596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 10628342 - 10628404
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  10628342 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 10628404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 8858564 - 8858382
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  8858564 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 8858465  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  ||| |||| | ||| |||||||||||||||||||||||    
T  8858464 atggcggatcaatccaatat-aaatattactcctaatatttatatctatatgaagacttgataactctttatccatgatctgtg 8858382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 19926570 - 19926752
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcacatta--cacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||||   || ||||   || |||||||||||||    
T  19926570 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacatttttcataacttttactatgtagtattctc 19926669  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  ||| |||| | ||| |||||||||||||||||||||||    
T  19926670 atggcggatcaatccaatat-aaatattactcctaatatttatatctatttgaagacttgataactctttatccatgatctgtg 19926752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 26964037 - 26963855
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  26964037 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 26963938  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||| ||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  26963937 atggcggatcaatccaatat-aaatattactgctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 26963855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 26970860 - 26970678
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  26970860 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 26970761  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||| ||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  26970760 atggcggatcaatccaatat-aaatattactgctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 26970678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 28392944 - 28393126
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | |||||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  28392944 tagggtacatagtggtttcaggttgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 28393043  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||| ||||||||||||  |||||||| | ||| |||||||||||||||||| ||||    
T  28393044 atggcggatcaatccaatat-aaatattacttctaatatttatatctatgtgaagacttgataactctttatccatgatatgtg 28393126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 10677392 - 10677540
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcacatta--cacaac--tcacaatgtagtattctc 145  Q
    |||| ||||| ||||||| ||||  |||||||| || || ||||  ||||||||||||||||||| |||||   || |||  | || |||||||||||||    
T  10677392 taggatacatagtggtttcaagtcaaagggtgaaatacaccactatcactatgagaatatcttatgacatttttcataacatttactatgtagtattctc 10677491  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatg 195  Q
     | | ||||||||| ||||  |||||||||||||||||||||||||||||    
T  10677492 atagtgggtcaatccagtat-aaatattactcctaatatttatacatatg 10677540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 10891032 - 10891180
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcacatta--cacaac--tcacaatgtagtattctc 145  Q
    |||| ||||| ||||||| ||||  |||||||| || || ||||  ||||||||||||||||||| |||||   || |||  | || |||||||||||||    
T  10891032 taggatacatagtggtttcaagtcaaagggtgaaatacaccactatcactatgagaatatcttatgacatttttcataacatttactatgtagtattctc 10891131  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatg 195  Q
     | | ||||||||| ||||  |||||||||||||||||||||||||||||    
T  10891132 atagtgggtcaatccagtat-aaatattactcctaatatttatacatatg 10891180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 868874 - 868812
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| ||||| |||||||||||||||||    
T  868874 aaatattactcctaatatttatatctatgtgaagacttgataactttttatccatgatctgtg 868812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 5707597 - 5707535
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||| |||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  5707597 aaatattactcataatatttatatctatgtgaagacttgataactctttatccatgatctgtg 5707535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 5714225 - 5714163
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||| |||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  5714225 aaatattactcataatatttatatctatgtgaagacttgataactctttatccatgatctgtg 5714163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 10621263 - 10621325
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||||||| |||||||  |||||||| | ||| |||||||||||||||||||||||    
T  10621263 aaatattactcctaaaatttatatctatgtgaagacttgataactctttatccatgatctgtg 10621325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 5667937 - 5668115
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | ||  |||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  5667937 tagggtacatagtggtttcaggtctaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 5668036  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
     | | | ||||||| ||||  |||||||||||||||||||||||| || ||||| || || |||||||||||| ||||||    
T  5668037 atggtgagtcaatccagtat-aaatattactcctaatatttatacctacgtgaagatatgataactctttatctatgatc 5668115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 8845480 - 8845418
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  ||| | || | ||| |||||||||||||||||||||||    
T  8845480 aaatattactcctaatatttatatctatataaagaattgataactctttatccatgatctgtg 8845418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 35223837 - 35223779
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    |||||||||||||||||||||||||||||| || |  || |||||||||||| ||||||    
T  35223837 aaatattactcctaatatttatacatatgtaaagacatgataactctttatctatgatc 35223779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 56516333 - 56516271
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||| | |||||||||| |||||||| | ||| ||||||||||||||| |||||||    
T  56516333 aaatattactcatgatatttatacgtatgtgaagacttgataactctttatccattatctgtg 56516271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 34777893 - 34777975
Alignment:
Q  134 tgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttat 217  Q
    |||||||||||| | ||||||||||||| || |||| ||||||| | |||||||||||||| |||| | ||| ||||| |||||    
T  34777893 tgtagtattctcatggagggtcaatctaata-caaaaattactcattatatttatacatatttgaagacttgataactttttat 34777975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 20311565 - 20311511
Alignment:
Q  171 attactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    ||||||||||||||||| |  |||||||| | ||| |||||||||||||||||||    
T  20311565 attactcctaatatttacatctatgtgaagacttgataactctttatccatgatc 20311511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 3369163 - 3369251
Alignment:
Q  101 tgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttata 189  Q
    |||||||||||||| ||| || || |||| || |||||||||||||   | ||||||||| | || ||||||||||||||||||||||||    
T  3369163 tgagaatatcttatgacaatttcataacttactatgtagtattctcacagtgggtcaatccaata-caaatattactcctaatatttata 3369251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 6110461 - 6110279
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  6110461 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 6110362  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  6110361 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 6110279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 8490892 - 8490710
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  8490892 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 8490793  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  8490792 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 8490710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 15600694 - 15600876
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  15600694 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 15600793  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  15600794 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 15600876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 15607239 - 15607421
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  15607239 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 15607338  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  15607339 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 15607421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 16482293 - 16482475
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  16482293 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 16482392  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  16482393 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 16482475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 18523060 - 18522878
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||| || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||| ||    
T  18523060 tagggtacatagtggtttcaggtcgaagggtgaaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattttc 18522961  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18522960 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18522878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 10572522 - 10572584
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  10572522 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 10572584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 10579285 - 10579347
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  10579285 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 10579347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 13211579 - 13211517
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  13211579 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 13211517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 13248884 - 13248822
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  13248884 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 13248822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 13517088 - 13517026
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  13517088 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 13517026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 17199997 - 17200176
Alignment:
Q  53 ggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctcttt 148  Q
    ||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || ||||||||||||| |     
T  17199997 ggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctcata 17200096  T
Q  149 gagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    | ||||||||| | || |||||| |||||||||||||||||  |||||||| | ||| |||||||||||||| ||||||||    
T  17200097 gcgggtcaatccaata-caaatactactcctaatatttatatctatgtgaagacttgataactctttatccacgatctgtg 17200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 18520252 - 18520190
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18520252 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18520190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 32056709 - 32056892
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | |||||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  32056709 tagggtacatagtggtttcaggttgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 32056808  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatattt-atacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  ||||||||||| |||||||| |||  |||||||| | ||| |||||||||||||||||||||||    
T  32056809 atggcggatcaatccaatat-aaatattactcataatattttatatctatgtgaagacttgataactctttatccatgatctgtg 32056892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 1647455 - 1647513
Alignment:
Q  171 attactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||  |||||| | | ||| |||||||||||||||||||||||    
T  1647455 attactcctaatatttatatctatgtgtagacttgataactctttatccatgatctgtg 1647513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 15342149 - 15342211
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||| ||||||  |||||||| | | | |||||||||||||||||||||||    
T  15342149 aaatattactcctaatttttatatctatgtgaagactagataactctttatccatgatctgtg 15342211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 15357516 - 15357578
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||| ||||||  |||||||| | | | |||||||||||||||||||||||    
T  15357516 aaatattactcctaatttttatatctatgtgaagactagataactctttatccatgatctgtg 15357578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 17781048 - 17781110
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||| ||||| ||||    
T  17781048 aaatattactcctaatatttatatctatgtgaagacttgataactctttatctatgatttgtg 17781110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 28954026 - 28953965
Alignment:
Q  164 aacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    ||||||||||||||||||| | |||||||||||||| | ||  |||||||||||| ||||||    
T  28954026 aacaaatattactcctaatgtgtatacatatgtgaagactttgtaactctttatcaatgatc 28953965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 29925248 - 29925189
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatct 226  Q
    |||||||||||||||||||||||  |||||||| | ||  | ||||||||||||||||||    
T  29925248 aaatattactcctaatatttatatctatgtgaagacttaatgactctttatccatgatct 29925189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 29974401 - 29974342
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatct 226  Q
    |||||||||||||||||||||||  |||||||| | ||  | ||||||||||||||||||    
T  29974401 aaatattactcctaatatttatatctatgtgaagacttaatgactctttatccatgatct 29974342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 17136750 - 17136574
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttat--cacattacacaac--tcacaatgtagtattctc 145  Q
    |||||||||| ||||||| |||| ||||||||  || || ||||  |||||||||||||||||||  ||| ||  | |||  | || |||||||||||||    
T  17136750 tagggtacatagtggtttcaagtcgaagggtggaatacaccactatcactatgagaatatcttatgacactttcaataacttttactatgtagtattctc 17136651  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | ||||||||| | | | ||||||||||||||||||       |||||||| | ||| |||||||||||||||||||||||    
T  17136650 atggtgggtcaatccaat-ataaatattactcctaatat------ctatgtgaagacttgataactctttatccatgatctgtg 17136574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 32280441 - 32280313
Alignment:
Q  96 cactatgagaatatcttatcaca--ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacata 193  Q
    ||||||||||||||||||| |||  |||||  |||||| ||||| ||||||| ||| ||||||| | |||   |||||||| || ||||  |||||| ||    
T  32280441 cactatgagaatatcttatgacactttacatgactcactatgtattattctcattgtgggtcaaccgagtgt-aaatattattcgtaatgattataccta 32280343  T
Q  194 tgtgaaaatttgttaactctttatccatga 223  Q
    |||||| |||   |||||||||||||||||    
T  32280342 tgtgaagattaaataactctttatccatga 32280313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 20522135 - 20522066
Alignment:
Q  154 tcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatga 223  Q
    |||||| || ||||| ||||||||||||||||||||| ||| | |||||||| ||| | | |||||||||    
T  20522135 tcaatcaaggaacaactattactcctaatatttatacctatataaaaatttgataattttatatccatga 20522066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 18796903 - 18796721
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || |||   ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  18796903 tagggtacatagtggtttcaggtcgaagggtggaatacaccaccatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 18796804  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | |||| |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18796803 atagaggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18796721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 18620114 - 18620023
Alignment:
Q  133 atgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    ||||||||||||| | | ||||||||||||||  |||||||||||||||||||||||| |||||||| |  || |||||||||||| ||||||    
T  18620114 atgtagtattctcatggtgggtcaatctagtat-aaatattactcctaatatttatacctatgtgaagacatgataactctttatctatgatc 18620023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 21330058 - 21330240
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  21330058 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 21330157  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  ||||||||||| |||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  21330158 atggcggatcaatccaatat-aaatattactcataatatttatatctatgtgaagacttgataactctttatccatgatctgtg 21330240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 18851989 - 18852047
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    ||||||||||| |||||||||||||||| |||| | ||| ||||||||||| |||||||    
T  18851989 aaatattactcttaatatttatacatatttgaagacttgataactctttattcatgatc 18852047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 24229355 - 24229450
Alignment:
Q  101 tgagaatatcttatcaca-ttacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgt 196  Q
    |||||||||||||| ||| || || |||| || |||||||||||||   | ||||||||| ||||  |||||||||||||||||||||||| |||||    
T  24229355 tgagaatatcttatgacaatttcataacttactatgtagtattctcacggtgggtcaatccagtat-aaatattactcctaatatttatacctatgt 24229450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 18252427 - 18252245
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  18252427 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 18252328  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18252327 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18252245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 18532324 - 18532506
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  18532324 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 18532423  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  18532424 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 18532506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 3855816 - 3855911
Alignment:
Q  133 atgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||||| ||| ||||||||| | ||  |||||||||||||||||||||||| |||||||| | ||  |||||||||||||||||| ||||    
T  3855816 atgtagtattctcattgcgggtcaatccaatat-aaatattactcctaatatttatacctatgtgaagactttataactctttatccatgatttgtg 3855911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 21171163 - 21171225
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  21171163 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 21171225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 27131339 - 27131401
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  27131339 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 27131401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 27277472 - 27277545
Alignment:
Q  151 gggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    ||||||||||||||  |||||||||||||||||||||||| ||||||||||  || |||||||||||| ||||||    
T  27277472 gggtcaatctagtat-aaatattactcctaatatttatacctatgtgaaaacatgataactctttatctatgatc 27277545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 36816530 - 36816625
Alignment:
Q  133 atgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    ||||||||||||| | | ||||||||| | ||  |||||||||||||||||||||||  |||||| | | ||| |||||||||||||||||||||||    
T  36816530 atgtagtattctcatggtgggtcaatccaatat-aaatattactcctaatatttatatctatgtgtagacttgataactctttatccatgatctgtg 36816625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 27310507 - 27310569
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| ||||||||||||||| |||||||    
T  27310507 aaatattactcctaatatttatatttatgtgaagacttgataactctttatccataatctgtg 27310569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 23507177 - 23507119
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatc 225  Q
    |||||||||||||| ||||||||  |||||||||| ||| |||||| ||||||||||||    
T  23507177 aaatattactcctattatttatatctatgtgaaaacttgataactccttatccatgatc 23507119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 16358845 - 16359027
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcacattacaca--actc--acaatgtagtattctc 145  Q
    |||||||||||||||||| |||  ||||||||  || || ||||  ||||||||||||||||||| ||| | | ||  |||   || |||||||||||||    
T  16358845 tagggtacatggtggtttcaagacgaagggtggaatacaccactatcactatgagaatatcttatgacacttctcataacttttactatgtagtattctc 16358944  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  ||||||||||| |||||||||||  ||||||||   ||| ||||||||||||||| |||||||    
T  16358945 atggcggatcaatccaatat-aaatattactcataatatttatatctatgtgaaggcttgataactctttatccattatctgtg 16359027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 51997406 - 51997346
Alignment:
Q  135 gtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatatgt 196  Q
    ||||||||||| | | ||||||||||| ||  ||||||||||||||||||||||| ||||||    
T  51997406 gtagtattctcatggtgggtcaatctaatat-aaatattactcctaatatttataaatatgt 51997346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 7384 - 7322
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| |||||||||||||||||||||||    
T  7384 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgatctgtg 7322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 25800 - 25982
Alignment:
Q  50 tagggtacatggtggttttaagttgaagggtgacatgcatcacttccactatgagaatatcttatcaca--ttacacaactc--acaatgtagtattctc 145  Q
    |||||||||| ||||||| | || ||||||||  || || ||||  ||||||||||||||||||| |||  || || ||||   || |||||||||||||    
T  25800 tagggtacatagtggtttcaggtcgaagggtggaatacaccactatcactatgagaatatcttatgacacttttcataacttttactatgtagtattctc 25899  T
Q  146 tttgagggtcaatctagtaacaaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
     | | || |||||| | ||  |||||||||||||||||||||||  ||||||||   ||| |||||||||||||||||||||||    
T  25900 atggcggatcaatccaatat-aaatattactcctaatatttatatctatgtgaagtcttgataactctttatccatgatctgtg 25982  T

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Target: scaffold0136 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 8898 - 8799
Alignment:
Q  96 cactatgagaatatcttatcacat-tacacaactcacaatgtagtattctctttgagggtcaatctagtaacaaatattactcctaatatttatacatat 194  Q
    ||||||||||||||||||| |||| | || |||  || | ||||||||||| ||| ||||||||||||||  ||||||||||||||||||||| ||||||    
T  8898 cactatgagaatatcttatgacatcttcataacatactaagtagtattctcattgggggtcaatctagtat-aaatattactcctaatatttacacatat 8800  T

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Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 5806 - 5744
Alignment:
Q  167 aaatattactcctaatatttatacatatgtgaaaatttgttaactctttatccatgatctgtg 229  Q
    |||||||||||||||||||||||  |||||||| | ||| ||||||||||||||||| |||||    
T  5806 aaatattactcctaatatttatatctatgtgaagacttgataactctttatccatgacctgtg 5744  T

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Target: scaffold0376 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 11736 - 11765
Alignment:
Q  167 aaatattactcctaatatttatacatatgt 196  Q
    ||||||||||||||||||||||||||||||    
T  11736 aaatattactcctaatatttatacatatgt 11765  T

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