View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_86 (Length: 238)
Name: NF11036_high_86
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_86 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 39036559 - 39036384
Alignment:
| Q |
1 |
acataaggagggaaaatttaatgcgatggctaattttaataaaataatagtaatgttttgcagccaatcaataattaaatgtttggacaaatgaaatttg |
100 |
Q |
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| T |
39036559 |
acataaggagggaaaatttaatgcgatggctaattttaataaaataatagtaatgttttgcagccaatcaataattaaatgtttggacaaatgaaatttg |
39036460 |
T |
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| Q |
101 |
attaaattgataaggatacaactcatgttttgtgtaatgtgcataaggagatacaaattcatgcaacatgtacaag |
176 |
Q |
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| T |
39036459 |
attaaattgataaggatacaactcatgttttgtgtaatgtgcataaggagatacaaattcatgcaacatgtacaag |
39036384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 39036372 - 39036337
Alignment:
| Q |
197 |
tttctcccattaaatgaataagccgcttcatctcac |
232 |
Q |
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| T |
39036372 |
tttctcccattaaatgaataagccgcttcatatcac |
39036337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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