View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_9 (Length: 624)
Name: NF11036_high_9
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 18 - 617
Target Start/End: Complemental strand, 49168501 - 49167902
Alignment:
| Q |
18 |
cttttttgctactcccctcaaccctctaaagttgtaacttataatcttcatgataaaattccttacttccacccacattgatcaggggctccacggctcc |
117 |
Q |
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| T |
49168501 |
cttttttgctactcccctcaaccctctaaagttgtaacttataatcttcatgataaaattccttacttccacccacattgatcaggggctccacggctcc |
49168402 |
T |
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| Q |
118 |
acctccttcattagagttaccaatgccctgttttctctattttcatgaacatttaacggttgcgccaaccctccttcttcgcctgatttcactagaccga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49168401 |
acctccttcattagagttaccaatgccctgttttctctattttcatgaacatttaacggttgcgccaaccctccttcttcgcctgatttcactagaccga |
49168302 |
T |
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| Q |
218 |
ttccattcccaaactccttgtgctactactctagaatcactatgcaatattgtcaaggatttccattatgtactatcaacgaaggtttattgagttcgaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49168301 |
ttccattcccaaactccttgtgctactactctagaatcactatgcaataatgtcgaggatttccattatgtactatcaacaaaggtttattgagttcgaa |
49168202 |
T |
|
| Q |
318 |
tgattgatacctgattttcgctgtttgtcctttccttttttcattcagaattgaacgccttctttttcttctgtctttagaacatgatgttgccaatgta |
417 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49168201 |
tgattgatacctgattttcgccgtttgtcctttccttttttcattcagaattgaacgccttctttttcttctgtctttagaacatgatgttgccaatgta |
49168102 |
T |
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| Q |
418 |
tttaggttgtgtatcatcttggtacgtcttaattgactcatggttttcagataatgagattcccatatcagcaccctttgtgtannnnnnnnccttttat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49168101 |
tttaggttgtgtatcatcttggtacgtcttaattgactcatggttttcagataatgagattcccatatcagcaccctttgtgtattttttttccttttat |
49168002 |
T |
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| Q |
518 |
gctggaaccattctccaaatgctcttctaattcatcgtcctcactgaaaaattgaacaaggtctcattggaaggcttattcaaacttgtattttcatctc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49168001 |
gctggaaccattctccaaatgctcttctaattcatcgtcctcgctgaaaaattgaacaaggtctcattggaaggcttattcaaacttgtattttcatctc |
49167902 |
T |
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