View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_93 (Length: 218)
Name: NF11036_high_93
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_93 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 44623302 - 44623123
Alignment:
| Q |
23 |
aacatataaatatacacattttttaagtctaagattgtgaggcattgatttttcttgacaaaggcatggaaatctatataacaaaagcatgaaaaataat |
122 |
Q |
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| T |
44623302 |
aacatataaatatacacattttttaagtctaagattgcgaggcattgatttttcttgacaaaggcatggaaatctatataacaaaagcatgaaaaataat |
44623203 |
T |
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| Q |
123 |
aacaagaagtagggttttaataatttgttccaattgagatacttgcaatacaagcaaagaaggtataagatcctacaaac |
202 |
Q |
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| T |
44623202 |
aacaagaagtagggttttaataatttgttccaattgagatacttgcaatacaagcaaagaaggtataagatcctacaaac |
44623123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 44623398 - 44623360
Alignment:
| Q |
13 |
gagaagaaaaaacatataaatatacacattttttaagtc |
51 |
Q |
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| T |
44623398 |
gagaagaaaaaacatataaatatacacagtttttaagtc |
44623360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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