View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_high_98 (Length: 201)
Name: NF11036_high_98
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_high_98 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 3e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 2114782 - 2114653
Alignment:
| Q |
19 |
cacagaacaaacatccattgaactaagtaaacaccaccactgcagtctgcagttcacttctaatgcatttgaaatgataccgagcctgtaactaagccac |
118 |
Q |
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| T |
2114782 |
cacagaacaaacatccattgaactaagtaaacaccaccactgcagtctgcagttgacttctaatgcatttgaaatgataccgagcctgtaactaagccac |
2114683 |
T |
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| Q |
119 |
tgcaccgcagctctaacaatagcaatagat |
148 |
Q |
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| T |
2114682 |
tgcaccgcagctctaacaatagcaatagat |
2114653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 2114353 - 2114318
Alignment:
| Q |
147 |
ataataacatcccaaaaagaacattgttatggaatt |
182 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2114353 |
ataataacatcccaaaaagaacattgttatggaatt |
2114318 |
T |
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