View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_11 (Length: 573)
Name: NF11036_low_11
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 53 - 557
Target Start/End: Original strand, 44954618 - 44955114
Alignment:
| Q |
53 |
ccaaagtaaggtaatctcctcttccatgatgtgaagagggatgaaggaaaaggcaagtcatgaaggcaaagggaaggtaacgcctttcttccaggatcaa |
152 |
Q |
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| T |
44954618 |
ccaaagtaaggtaatctcctcttccatgatgtgaagagggatgaaggaaaaggcaagtcatgaaggcaaagggaaggtaacgcctttcttccaggatcaa |
44954717 |
T |
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| Q |
153 |
ttcatgtaacttagttatttatgtaacacacggattaatttcggtttattctcaaatatgtagtacnnnnnnnnnnnnnnnnnnnaaaacattaagtgct |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
44954718 |
ttcatgtaacttagttatttatgtaacacacggattaatttcggtttattctcaaatatgtact--------tttgttttgttttaaaacatgaagtgct |
44954809 |
T |
|
| Q |
253 |
tgtgcggattgctatctatggtgattgcttatgttatgtttatttatcaaatttccttattgtgtttcatgtaatttggaatcatttatgttattgtttc |
352 |
Q |
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| T |
44954810 |
tgtgcggattgctatctatggtgattgcttatgttatgtttatttatcaaatttccttattgtgtttcatgtaatttggaatcatttatgttattgtttc |
44954909 |
T |
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| Q |
353 |
tttttccacacatggtacatgtaatttggaatgtttgattggaactatttgttctaagtttctgatcatacgatgcttgtgtctgggaggaaggtaatct |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44954910 |
tttttccacacatggtacatgtaatttggaatgtttgattggaactatttgttctaagtttctgatcatacgatggttgtgtctgggaggaaggtaatct |
44955009 |
T |
|
| Q |
453 |
acagaggatgaggtggcaatgttaagctaagctaaggatatgcttgtgaactgttaagctaagctagtttatactttattgttatgtagttggataggta |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44955010 |
acagaggatgaggtggcaatgttaagctaagctaaggatatgcttgtgaactgttaagctaagctagtttatactttattgttatgtagttggataggta |
44955109 |
T |
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