View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_12 (Length: 570)

Name: NF11036_low_12
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_low_12
NF11036_low_12
[»] chr7 (3 HSPs)
chr7 (29-556)||(11331469-11331998)
chr7 (353-407)||(18129520-18129575)
chr7 (361-407)||(16866455-16866501)
[»] chr2 (4 HSPs)
chr2 (358-425)||(3835223-3835290)
chr2 (358-407)||(31469078-31469127)
chr2 (358-407)||(7932750-7932799)
chr2 (358-407)||(10459273-10459322)
[»] chr4 (2 HSPs)
chr4 (349-407)||(1577613-1577671)
chr4 (346-386)||(49772359-49772399)
[»] chr5 (4 HSPs)
chr5 (358-407)||(39030570-39030619)
chr5 (346-397)||(32332534-32332585)
chr5 (358-400)||(39030624-39030666)
chr5 (358-407)||(33669981-33670030)
[»] chr1 (1 HSPs)
chr1 (358-407)||(3739868-3739917)
[»] chr8 (2 HSPs)
chr8 (358-399)||(43149510-43149550)
chr8 (358-399)||(43473200-43473241)
[»] chr3 (2 HSPs)
chr3 (358-407)||(32221524-32221573)
chr3 (361-405)||(23314730-23314774)


Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 29 - 556
Target Start/End: Original strand, 11331469 - 11331998
Alignment:
Q  29 aaattccaaatgtggatataccaccacacagacacacactcaaaaatgattccttccttggtaagaaaccgggttatgcttgtatctactttgagtggga 128  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11331469 aaattccagaggtggatataccaccacacagacacacactcaaaaatgattccttccttggtaagaaaccgggttatgcttgtatctactttgagtagga 11331568  T
Q  129 agtggctccggtcttgtgttggagcagatagcgttgggtgaagggtagttacgggccgagctacttatggctggttggctagttgccggcctctgctact 228  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||    
T  11331569 agtggctccggttttgtgttggagcagatagcgttgggtgaagggtagttacgggccgaactacttatggttggttggctggttgccggcctttgctact 11331668  T
Q  229 ctttttgaacggttgtacaaatannnnnnnnnnnnnnnnnnnngtatgttggaaagggctacatctagtgctccagttgtatgttatgttgactttttgt 328  Q
    |||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11331669 ctttttgaacggttgtacaaatattttttcttttgtttattttgtatgttggaaagggctacatctagtgctccagttgtatgttatgttgactttttgt 11331768  T
Q  329 agttttcgcacctgttttactccagtctcaaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaatgtaaaccaaatccatctaact 428  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11331769 agttttcgctcctcttttactccggtctcaaatataagcaaaaacaagtcaaataaagttagtgtatttggttaaaaatgtaaaccaaatccatctaact 11331868  T
Q  429 tgtttaac--nnnnnnnngcttatattcgaaactcaagggagtatatcttaaccattcaaaaaataaataacacacactcggaaagaagtttcctttctt 526  Q
    ||||||||          ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||    
T  11331869 tgtttaacttttttttttgcttatattcgaaactcaagggagtatatctttgccattcaaaaaataaataacacacactcagaaagaagtttcctttctt 11331968  T
Q  527 ttcaagtaattttttctatgtattgttctt 556  Q
    ||||||||||||||||||||||||||||||    
T  11331969 ttcaagtaattttttctatgtattgttctt 11331998  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 18129520 - 18129575
Alignment:
Q  353 gtctcaaatataagca-aaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    |||||||||||||| | |||| ||||||||||||||| |||||||| |||||||||    
T  18129520 gtctcaaatataagaagaaaaaaagtcaaataaagttgatgtatttagttaaaaat 18129575  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 16866501 - 16866455
Alignment:
Q  361 tataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    |||||||||||||  |||||  |||||||||||||||||||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 16866455  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 425
Target Start/End: Complemental strand, 3835290 - 3835223
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaatgtaaaccaaatccatcta 425  Q
    ||||||||| ||||| || ||||||||||||||||||| | ||||||||| |||| ||||| ||||||    
T  3835290 aaatataagaaaaaaaaactcaaataaagttaatgtatctagttaaaaatttaaatcaaatacatcta 3835223  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 31469078 - 31469127
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||||||    
T  31469078 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 31469127  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 7932750 - 7932799
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    |||||||||||||||| ||||||  |||||||| |||||||||| |||||    
T  7932750 aaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaat 7932799  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 10459273 - 10459322
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    ||||||||||||||||  |||||  ||||||||||||||||||| |||||    
T  10459273 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaat 10459322  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 1577671 - 1577613
Alignment:
Q  349 tccagtctcaaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    |||||||||||||||||||||||| ||||| || |||||| ||| || |||||||||||    
T  1577671 tccagtctcaaatataagcaaaaaaaagtcgaacaaagtttatgcatctggttaaaaat 1577613  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 49772359 - 49772399
Alignment:
Q  346 tactccagtctcaaatataagcaaaaataagtcaaataaag 386  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  49772359 tactccagtctcaaatataagcaaaaaaaagtcaaacaaag 49772399  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 39030570 - 39030619
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||||||    
T  39030570 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 39030619  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 32332585 - 32332534
Alignment:
Q  346 tactccagtctcaaatataagcaaaaataagtcaaataaagttaatgtattt 397  Q
    |||||| ||||||||||||| ||||||||||||||| | |||| ||||||||    
T  32332585 tactccggtctcaaatataaacaaaaataagtcaaacatagttgatgtattt 32332534  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 39030666 - 39030624
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggt 400  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  39030666 aaatataagcaaaaattagtcaacaaaagttaatgtatttggt 39030624  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 33670030 - 33669981
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    |||| |||||||||||  |||||| ||||||||||||||||||| |||||    
T  33670030 aaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaat 33669981  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 3739917 - 3739868
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||||||    
T  3739917 aaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaat 3739868  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 43149550 - 43149510
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttgg 399  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  43149550 aaatataagcaaaaa-aagtcaaataaaattaatgtatttgg 43149510  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Original strand, 43473200 - 43473241
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttgg 399  Q
    |||||||||||||| |||||||||||||||| || |||||||    
T  43473200 aaatataagcaaaactaagtcaaataaagttgatttatttgg 43473241  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 32221573 - 32221524
Alignment:
Q  358 aaatataagcaaaaataagtcaaataaagttaatgtatttggttaaaaat 407  Q
    |||| ||||||||||| ||||||  ||||||||||||||||||| |||||    
T  32221573 aaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaat 32221524  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 23314774 - 23314730
Alignment:
Q  361 tataagcaaaaataagtcaaataaagttaatgtatttggttaaaa 405  Q
    ||||||||||| || |||||| |||| ||||||||||||||||||    
T  23314774 tataagcaaaagtaggtcaaagaaaggtaatgtatttggttaaaa 23314730  T

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