View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_15 (Length: 551)
Name: NF11036_low_15
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Complemental strand, 43607497 - 43606958
Alignment:
| Q |
13 |
gacatcacttagaagaaaccgaggggaaaaactggccagacaacatctgaaaatacccgtgctctgttggaatatataaaaaatccaactcacccatatt |
112 |
Q |
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| T |
43607497 |
gacataacttagaagaaaccgaggggaaaaactggccagacaacatctgaaaatacccgtgctctgttggaatatataaaaaatccaactcacccatatt |
43607398 |
T |
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| Q |
113 |
tattttgccttaattgccactaaagaaaggnnnnnnnn--cccgcataatgactaacttttgaaaggagtaccttgccttttggctaataccagtacata |
210 |
Q |
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| T |
43607397 |
tattttgccttaattgccactaaagaaaggttttttttttcccgcataatgactaacttttgaaaggagtaccttgccttttggctaataccagtacatg |
43607298 |
T |
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| Q |
211 |
tagaagacaacagaaatgtgatatgttccaaattgcatcaatctgaccccatattaaaaaacaatgctcaagattttcctcaattctctagctacctctc |
310 |
Q |
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| T |
43607297 |
tagaagacaacagaaatgtgatatgttccaaattgcatcaatctgaccctatattaaaaaacaatgctcaagattttcctcaattctccagctacctctc |
43607198 |
T |
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| Q |
311 |
aaatgacgaaaccagtgaggatcgagggaggttggttcttctctatggaagggtactacagaccacacaagctaaacaaaattaggttctaaggctcgaa |
410 |
Q |
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| T |
43607197 |
aaatgaggaaaccagtgaggatcgagggaggttggtccttctccatggaagggtactacagaccacacaagctaaacaaaactaggttctaaggctctaa |
43607098 |
T |
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| Q |
411 |
tctattgacaagttcaaaattttgtagcactacacactagcttcttacaataagagcattgaaaagtcacaaacacgcaaaaaccttaaaatgctactac |
510 |
Q |
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| T |
43607097 |
tctattgacaagttcaaaattttgtagcacgacacactagcttcttacaataagagcattgaaaagtcacaaacacgc-aaaaccttaaaatgctacttc |
43606999 |
T |
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| Q |
511 |
caaaccagagcatagataattgatttagggaacatttatat |
551 |
Q |
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| T |
43606998 |
caaaccagagcatagataattgatttagggaacatttatat |
43606958 |
T |
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