View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_17 (Length: 534)

Name: NF11036_low_17
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_low_17
NF11036_low_17
[»] chr5 (2 HSPs)
chr5 (11-518)||(8939399-8939906)
chr5 (11-160)||(8946932-8947081)
[»] chr8 (3 HSPs)
chr8 (437-511)||(33474216-33474290)
chr8 (448-518)||(6863048-6863118)
chr8 (434-485)||(13921204-13921255)
[»] chr4 (3 HSPs)
chr4 (434-506)||(51079059-51079131)
chr4 (477-518)||(8482372-8482413)
chr4 (418-490)||(56127355-56127427)
[»] chr1 (2 HSPs)
chr1 (424-511)||(41625470-41625557)
chr1 (448-518)||(7890387-7890457)
[»] chr3 (2 HSPs)
chr3 (450-495)||(52416382-52416427)
chr3 (452-509)||(40285439-40285496)
[»] chr6 (3 HSPs)
chr6 (446-518)||(27598160-27598232)
chr6 (451-518)||(13587603-13587670)
chr6 (419-483)||(11620257-11620321)
[»] chr7 (1 HSPs)
chr7 (477-515)||(46981398-46981436)
[»] chr2 (1 HSPs)
chr2 (450-518)||(42206094-42206162)


Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 11 - 518
Target Start/End: Original strand, 8939399 - 8939906
Alignment:
Q  11 cacagagaacaattggaggaggcattgaaagaggatgttcagattttgaaaaccaagcagcaagactcttcaactccaaattagtatctcaaatggatgc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8939399 cacagagaacaattggaggaggcattgaaagaggatgttcagattttgaaaaccaagcagcaagactcttcaactccaaattagtatctaaaatggatgc 8939498  T
Q  111 ctttgaaaataaatttccagaagctaagcttgtctaccttgatatttacacttcattatcgcagttagtttaaaaccctgcaaaatacggtaatcaaacg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  8939499 ctttgaaaataaatttccagaagctaagcttgtctaccttgatatttacacttcattatcgcagttagttcaaaaccctgcaaaatacggtaatcaaaag 8939598  T
Q  211 caagtattgtcatttttacctcattatacatattattggacggttatactatacatttgtgaacatttagatgcctatagacagtaaatgatattcacca 310  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8939599 caagtattgtcatttttacctcattatacatattattggacagttatactatacatttgtgaacatttagatgcctatagacagtaaatgatattcacca 8939698  T
Q  311 caaagtataagaagttggtgtataagaaacttttcacataaataaaaggaaaacatttactagttattagatcaattcaaattcatttgcatcttcatat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8939699 caaagtataagaagttggtgtataagaaacttttcacataaataaaaggaaaacatttactagttattagatcaattcaaattcatttgcatcttcatat 8939798  T
Q  411 atagagtaaggctaagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaatta 510  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  8939799 atagagtaaagctaagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgtttccaccattggatcaataagtttcaccgttaaatta 8939898  T
Q  511 attgaaat 518  Q
    ||||||||    
T  8939899 attgaaat 8939906  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 8946932 - 8947081
Alignment:
Q  11 cacagagaacaattggaggaggcattgaaagaggatgttcagattttgaaaaccaagcagcaagactcttcaactccaaattagtatctcaaatggatgc 110  Q
    |||||||||||||||||||||| ||  | |||   ||||||| ||| |||||| |||| |||| | |||||||||||||| |||||||||||||||||||    
T  8946932 cacagagaacaattggaggaggaatgtatagacactgttcaggtttagaaaacgaagctgcaatagtcttcaactccaaactagtatctcaaatggatgc 8947031  T
Q  111 ctttgaaaataaatttccagaagctaagcttgtctaccttgatatttaca 160  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8947032 ctttgaaaataaatttccagaggctaagcttgtctaccttgatatttaca 8947081  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 437 - 511
Target Start/End: Original strand, 33474216 - 33474290
Alignment:
Q  437 acaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaa 511  Q
    ||||||||| ||||||||||| |||| |||| ||||||  ||||||| |||||||||||||||||||||||||||    
T  33474216 acaaggaagataagtcttgcatcatgtacaaggttgttttcaccatttgatcaataagtttcaccattaaattaa 33474290  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 6863048 - 6863118
Alignment:
Q  448 aagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaat 518  Q
    |||||||||| ||| |||||  | ||| |||||||||||||||||| | ||||||||||||||| ||||||    
T  6863048 aagtcttgcatcatacacaagctagtttccaccattggatcaataaatctcaccattaaattaaatgaaat 6863118  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 485
Target Start/End: Complemental strand, 13921255 - 13921204
Alignment:
Q  434 tgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattgg 485  Q
    |||||||||| | |||||||||||||||| |||| |||||| ||||||||||    
T  13921255 tgcacaaggatgataagtcttgcaccatgtacaaggttgtttccaccattgg 13921204  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 506
Target Start/End: Original strand, 51079059 - 51079131
Alignment:
Q  434 tgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaa 506  Q
    |||||||| ||| ||||||||||||||||||||| |||||| |||| ||||||||||||| || ||| |||||    
T  51079059 tgcacaagcaagataagtcttgcaccatgcacaaggttgtttccactattggatcaataaattccactattaa 51079131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 8482372 - 8482413
Alignment:
Q  477 caccattggatcaataagtttcaccattaaattaattgaaat 518  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||    
T  8482372 caccattggttcaataaatttcaccattaaattaaatgaaat 8482413  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 56127355 - 56127427
Alignment:
Q  418 aaggctaagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaa 490  Q
    ||||| ||||||||  ||||||||  ||  ||||||||||||||||||||| |||||  ||||||||| ||||    
T  56127355 aaggccaagtctatggtgcacaagtgagacaagtcttgcaccatgcacaaacttgttttcaccattggttcaa 56127427  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 511
Target Start/End: Original strand, 41625470 - 41625557
Alignment:
Q  424 aagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaa 511  Q
    ||||||||  |||||| | ||| |||||||||||||||||||||  || || |||||||| ||||||||| |||||| ||||||||||    
T  41625470 aagtctatggtgcacatgcaagataagtcttgcaccatgcacaagattctttccaccattagatcaataaatttcactattaaattaa 41625557  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 7890387 - 7890457
Alignment:
Q  448 aagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaat 518  Q
    |||| ||||| |||||||||||| |||  ||| ||||||||||||| ||||||||||||||||| ||||||    
T  7890387 aagtattgcatcatgcacaaagtagttttcactattggatcaataaatttcaccattaaattaaatgaaat 7890457  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 495
Target Start/End: Original strand, 52416382 - 52416427
Alignment:
Q  450 gtcttgcaccatgcacaaagttgttgccaccattggatcaataagt 495  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||    
T  52416382 gtcttgcaccatgcacatacttgtttccaccattggatcaataagt 52416427  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 40285496 - 40285439
Alignment:
Q  452 cttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaatt 509  Q
    |||||||||||||||||||||||   || ||| ||||||||||| |||| ||||||||    
T  40285496 cttgcaccatgcacaaagttgtttatacaatttgatcaataagtctcactattaaatt 40285439  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 27598160 - 27598232
Alignment:
Q  446 ttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaat 518  Q
    |||||||||||||||||||||| || |||   |||||||||||||||||  |||  |||||||||| ||||||    
T  27598160 ttaagtcttgcaccatgcacaacgtggtttttaccattggatcaataaggctcagtattaaattaaatgaaat 27598232  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 13587603 - 13587670
Alignment:
Q  451 tcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaat 518  Q
    |||||||||||||| || |||||| | |||||||||||||||| | |||| |||||||| | ||||||    
T  13587603 tcttgcaccatgcataaggttgtttctaccattggatcaataaatctcactattaaattgaatgaaat 13587670  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 11620321 - 11620257
Alignment:
Q  419 aggctaagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccatt 483  Q
    |||| ||||||||  | |||||||||| |||||||||| ||||||||||||| |||  |||||||    
T  11620321 aggccaagtctatggttcacaaggaagataagtcttgcgccatgcacaaagtcgttttcaccatt 11620257  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 515
Target Start/End: Complemental strand, 46981436 - 46981398
Alignment:
Q  477 caccattggatcaataagtttcaccattaaattaattga 515  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  46981436 caccattggatcaataatttacaccattaaattaattga 46981398  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 42206094 - 42206162
Alignment:
Q  450 gtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaat 518  Q
    |||||||||||||||||| ||| || | |||| | |||||||||||  |||| ||||||||| ||||||    
T  42206094 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaat 42206162  T

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