View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_18 (Length: 528)
Name: NF11036_low_18
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_18 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Original strand, 29567962 - 29568468
Alignment:
| Q |
7 |
ataatctcatgaacttatttgagaacgtccataaaaattcaaagactacttttttcttttatggacacttgacataacattgacacataaattagtaata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29567962 |
ataatctcatgaacttatttgagaacgtccataaaaattcaaagactacttttttcttttatggacacttgatataacattgacacataaattagtaata |
29568061 |
T |
|
| Q |
107 |
agttgagaaaatgaaagtgctcgtatgtaaatatatatgaatacatcgataataatttgattatatgtgatcacacatgtcacacggacatgcttttatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29568062 |
agttgagaaaatgaaagtgctcgtatgtaaatatatatgtagacatcgataataatttgattataggtgatcacacatgtcacacggacatgcttttatg |
29568161 |
T |
|
| Q |
207 |
ttaagttgtgtttccgcggttgtcaagcaggtttgaatgatctaatggaaaccaaaggaggcaagaagaagtccagtagtagtgaatcgttattttacga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29568162 |
ttaagttgtgtttccgcggttgtcaagcaggtttgaatgatctaatggaaaccaaaggagccaagaagaagtccagtagtagtgaatcgttattttacga |
29568261 |
T |
|
| Q |
307 |
agctcccctcggctacactattgaatacgttcgtccaaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagttctaagattaaatga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29568262 |
agctcccctcggctacactattgaatacgttcgtccaaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagttctaagattaaatga |
29568361 |
T |
|
| Q |
407 |
ttccgattctggatttgttggaaactaatcttatttgattatggacttgtgctaatacatgtatttgttaattatgtgcagtgtgctaggaagccatcct |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29568362 |
ttccgattctggatttgttggaaactaatcttatttgattaatgacttgtgctaatacatgtatttgttaattatgtgcagtgtgctaggaagccatcct |
29568461 |
T |
|
| Q |
507 |
gatctac |
513 |
Q |
| |
|
||||||| |
|
|
| T |
29568462 |
gatctac |
29568468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 296 - 391
Target Start/End: Original strand, 3768 - 3863
Alignment:
| Q |
296 |
ttattttacgaagctcccctcggctacactattgaatacgttcgtccaaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagt |
391 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3768 |
ttattctacgaagctcccctcggatacagcattgaagacattcgtcctaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagt |
3863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University