View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_2 (Length: 836)
Name: NF11036_low_2
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 330 - 828
Target Start/End: Complemental strand, 7501084 - 7500586
Alignment:
| Q |
330 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7501084 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
7500985 |
T |
|
| Q |
430 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggttttgtgcctcttgtacnnnnnnnnnnnnnnnnnaaggagtacctcttgtac |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
7500984 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggtttagtgcctcttgtatttattttttatttttttagggagtacctcttgtac |
7500885 |
T |
|
| Q |
530 |
tcattctcatctttctattttaataaatattcatttgctgcttaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500884 |
tcattctcatctttctattttaataaatattcatttgctgctaaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
7500785 |
T |
|
| Q |
630 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaatt |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500784 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttccgaccttcgccacttgatctgcaacaacgaggaatt |
7500685 |
T |
|
| Q |
730 |
atggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttccttcttctc |
828 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500684 |
atggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttccttcttctc |
7500586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 7509182 - 7509053
Alignment:
| Q |
71 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaattccacatcagtaa |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
7509182 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagaggttgacaaattccaaatcagtaa |
7509083 |
T |
|
| Q |
171 |
attgcaaaggaagaagaataggaaaaggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7509082 |
tttgcaaaggaagaagaataggaaaaggaa |
7509053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 7501196 - 7501155
Alignment:
| Q |
220 |
tcctaagtgttctttctataatgtatcctaaatttattattt |
261 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7501196 |
tcctaagtgttctttctataatgtgtcctaaatttattattt |
7501155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 729 - 828
Target Start/End: Complemental strand, 7502118 - 7502019
Alignment:
| Q |
729 |
tatggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttccttcttctc |
828 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||| |||| || |||||| ||||| | | | ||| |||||||||| ||||||||| |||| |||||||| |
|
|
| T |
7502118 |
tatggcggaatatttgcacctcaaagtggccttcccttatggatccaatcgttaacgatgtcatctccactttccccggtggttacagttcattcttctc |
7502019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 8057200 - 8057240
Alignment:
| Q |
590 |
cccatcatgaataatttcagtaggttagatccagacatcat |
630 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8057200 |
cccatcatgaataatttcagtaggttatgtccagacatcat |
8057240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 27241492 - 27241558
Alignment:
| Q |
71 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttacc |
137 |
Q |
| |
|
|||| ||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27241492 |
tgaatcaatgtgtcaccattcttcttaatgcaattcaaaatggtgagaggaagaaatttgatttacc |
27241558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 27249111 - 27249183
Alignment:
| Q |
84 |
caccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaat |
157 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||| |||| ||| ||| ||||||||| ||||| |
|
|
| T |
27249111 |
caccattcttcttaatgcaattcaaaatggcgagaggaagaaattcgattaacccaag-aagagtttgtcaaat |
27249183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 605 - 761
Target Start/End: Original strand, 27240723 - 27240882
Alignment:
| Q |
605 |
ttcagtaggttagatccagacatcatccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgcc |
704 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| | |||||||| |||||||| || || ||||||| | || | || ||||||||| || || || | |
|
|
| T |
27240723 |
ttcagtaggttagatccagacatcatgcatacccacatccttccccgcctcgacggcacaaccttaatcgtcttattctctgtatgttcagaactccgtc |
27240822 |
T |
|
| Q |
705 |
acttgatctg---caacaacgaggaattatggcggaacatttgcacctccatgtggcctt |
761 |
Q |
| |
|
|| |||| || ||||||||| || ||||||||||||| |||||||| | |||||||| |
|
|
| T |
27240823 |
acatgatttgccacaacaacgaagatctatggcggaacatatgcacctcaaagtggcctt |
27240882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 747
Target Start/End: Original strand, 27253110 - 27253177
Alignment:
| Q |
680 |
tcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaattatggcggaacatttgcac |
747 |
Q |
| |
|
|||||||||| ||| || || |||||| |||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
27253110 |
tcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaacatatgcac |
27253177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 828
Target Start/End: Original strand, 27240915 - 27240952
Alignment:
| Q |
791 |
atcaccactttccctggtggttaccgttccttcttctc |
828 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
27240915 |
atctccactttccctggtggttaccgttcctttttctc |
27240952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 828
Target Start/End: Original strand, 27246448 - 27246481
Alignment:
| Q |
795 |
ccactttccctggtggttaccgttccttcttctc |
828 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
27246448 |
ccactttccctggtggttaccattccttcttctc |
27246481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University