View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_20 (Length: 496)
Name: NF11036_low_20
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 3428028 - 3428478
Alignment:
| Q |
17 |
aagtatgttgcaatgtgtcacacacttctattttataactcatgctccacattattcactacaaatcttccgatgtgggacttatattatgacattctaa |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
3428028 |
aagtatgctgcaatgtgtcacacacttctattttataactcatgctccacattattcactataaatcttccgatgtgggacttttattattacattctaa |
3428127 |
T |
|
| Q |
117 |
acaccattcaagtgtcagcagttcataccctagctcacacatttgctactccattagatccaaatagacagagcatgtttaatcatattgcagttgttga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
3428128 |
acaccattcaagtgtcagcagttcataccctagctcacacatttgccactccattagatccaaatagacaaagtatgtttaatcatattgcagttgttga |
3428227 |
T |
|
| Q |
217 |
atccgatattttttgttgaactgataatatgcgttacaaaggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3428228 |
atccgatattttttgttgaactgataatatgcgttacaaaggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtc |
3428327 |
T |
|
| Q |
317 |
ttactcaaaaagctcttgcagaaaccaattaaggaatgtttttgctccttgatctcctaactttccctctattttctatttttctagaacagttatgtat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3428328 |
ttactcaaaaagctcttgcagaaaccaattaaggaatgtttttgctccttgatctcctaactttccctatattttctatttttctagaacagttatgtat |
3428427 |
T |
|
| Q |
417 |
atcatgtaaggaaaccttttctagtgccattactatacctatttttacttt |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3428428 |
atcatgtaaggaaaccttttctagtgccattactatacctatttttacttt |
3428478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 9211523 - 9211606
Alignment:
| Q |
17 |
aagtatgttgcaatgtgtcacacacttctattttataactcatgctccacattattcactacaaatcttccgatgtgggactta |
100 |
Q |
| |
|
||||||||| |||||| ||||||| |||| ||||||||||||||||||| | |||||||| ||| |||||||||||||||||| |
|
|
| T |
9211523 |
aagtatgttacaatgtatcacacaattctgttttataactcatgctccataacattcactataaaacttccgatgtgggactta |
9211606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 9369962 - 9369879
Alignment:
| Q |
17 |
aagtatgttgcaatgtgtcacacacttctattttataactcatgctccacattattcactacaaatcttccgatgtgggactta |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||||||||||||||| | |||||||| ||| |||||||||||||||||| |
|
|
| T |
9369962 |
aagtatgttgcaatgaatcacacaattctcttttataactcatgctccataacattcactataaaacttccgatgtgggactta |
9369879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University