View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_21 (Length: 476)

Name: NF11036_low_21
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_low_21
NF11036_low_21
[»] chr3 (2 HSPs)
chr3 (19-476)||(32832204-32832661)
chr3 (19-476)||(32845485-32845942)
[»] chr6 (1 HSPs)
chr6 (19-476)||(17931982-17932439)
[»] chr1 (1 HSPs)
chr1 (64-476)||(46188504-46188922)


Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 32832204 - 32832661
Alignment:
Q  19 tttcctacccctctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32832204 tttcctacccctctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataa 32832303  T
Q  119 acctctcttttatcatggaaacaacataccaaaacttctctgaaagtggcaatatttcagaacctaaagtggaaatatttgaaagaagtgtttcaccagc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  32832304 acctctcttttatcatggaaacaacataccaaaacttctctgaaagtggcaatatttccgaacctaaagtggaaatatttgaaaggagtgtttcaccagc 32832403  T
Q  219 tgcctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32832404 tgcctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgt 32832503  T
Q  319 gttctaagcgacctaactaacttgtattttgcacttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaa 418  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32832504 gttctaagcgacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaa 32832603  T
Q  419 gatgcaactttgatctttctttaccgggataccaaccatttgacagaatctctctgct 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32832604 gatgcaactttgatctttctttaccgggataccaaccatttgacagaatctctgtgct 32832661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 32845485 - 32845942
Alignment:
Q  19 tttcctacccctctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32845485 tttcctacccctctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataa 32845584  T
Q  119 acctctcttttatcatggaaacaacataccaaaacttctctgaaagtggcaatatttcagaacctaaagtggaaatatttgaaagaagtgtttcaccagc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  32845585 acctctcttttatcatggaaacaacataccaaaacttctctgaaagtggcaatatttccgaacctaaagtggaaatatttgaaaggagtgtttcaccagc 32845684  T
Q  219 tgcctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32845685 tgcctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgt 32845784  T
Q  319 gttctaagcgacctaactaacttgtattttgcacttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaa 418  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32845785 gttctaagcgacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaa 32845884  T
Q  419 gatgcaactttgatctttctttaccgggataccaaccatttgacagaatctctctgct 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32845885 gatgcaactttgatctttctttaccgggataccaaccatttgacagaatctctgtgct 32845942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 17932439 - 17931982
Alignment:
Q  19 tttcctacccctctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataa 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17932439 tttcctacccctctaatcactcccctccctggacaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataa 17932340  T
Q  119 acctctcttttatcatggaaacaacataccaaaacttctctgaaagtggcaatatttcagaacctaaagtggaaatatttgaaagaagtgtttcaccagc 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17932339 acctctcttttatcatagaaacaacataccaaaacttctctgaaactggcaatatttcagaacctaaagtggaaatatttgaaaggagtatttcaccagc 17932240  T
Q  219 tgcctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgt 318  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17932239 tgcctgaactacgtctttattgagtgtcaccccaagtattccatctgaatcttcttcccttctacaagcaaaataagccttgtcatcaaaggctctttgt 17932140  T
Q  319 gttctaagcgacctaactaacttgtattttgcacttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaa 418  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  17932139 gttctaagcgacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcactacccattctaaagctacagttaa 17932040  T
Q  419 gatgcaactttgatctttctttaccgggataccaaccatttgacagaatctctctgct 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  17932039 gatgcaactttgatctttctttaccgggataccaaccatttgacaaaatctctgtgct 17931982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 64 - 476
Target Start/End: Complemental strand, 46188922 - 46188504
Alignment:
Q  64 aaatgttgtatcacagtcttaaaatcaggcacatatattccctcagattttataaac------ctctcttttatcatggaaacaacataccaaaacttct 157  Q
    ||||||||||| ||||||||||||||||||||||| || || ||| |||| ||||||      |||| ||| ||||  ||||| | ||||||||| ||||    
T  46188922 aaatgttgtataacagtcttaaaatcaggcacataaatcccttcacatttcataaacacaaacctctttttcatcacagaaactaaataccaaaatttct 46188823  T
Q  158 ctgaaagtggcaatatttcagaacctaaagtggaaatatttgaaagaagtgtttcaccagctgcctgagctacgtctttattgagtgtcaccccaagttt 257  Q
    |||||| |||||||||||||||||| |   | |||||||||||| ||||||||||||||||| | |||   || ||  | ||||||||||||||||||||    
T  46188822 ctgaaactggcaatatttcagaaccaatgattgaaatatttgaacgaagtgtttcaccagctacatgaagcacatccctcttgagtgtcaccccaagttt 46188723  T
Q  258 tccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaactaacttgtattttgcacttttc 357  Q
    |||||||||||||||||||||| |||| || |||||||| || |||||||| ||||||||||||||||| | ||||| ||||   ||||||||| ||||     
T  46188722 tccatctgaatcttcttcccttatacaggataaataagctttatcatcaaaagctctttgtgttctaagtgtcctaagtaacaaatattttgcattttta 46188623  T
Q  358 cttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttctttaccgggataccaaccat 457  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| | ||||||||||| |||| ||||| ||||||||||| |    
T  46188622 cttgcttcttttttgtttgaaagaagaattgctgcacttcccattctaaagagacagttaataagcaactttgatttttccttacctggataccaaccgt 46188523  T
Q  458 ttgacagaatctctctgct 476  Q
      |||| ||||||| ||||    
T  46188522 gggacaaaatctctgtgct 46188504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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