View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_22 (Length: 466)
Name: NF11036_low_22
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 9385009 - 9385465
Alignment:
| Q |
1 |
gtagtacagaacttaatatagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385009 |
gtagtacagaacttaatatagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatga |
9385108 |
T |
|
| Q |
101 |
gttaactttgttctgcattttctttagctccaaaagttggtatgaaattttcttctttgccttctttctgaaattttcataagaagaaacactgttttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385109 |
gttaactttgttctgcattttctttagctccaaaagttggtatgaaattttcttccttgccttctttctgaaattttcataagaagaaacactgttttca |
9385208 |
T |
|
| Q |
201 |
atgcttgaatcaccttttcttcttctacgtattgctgattgaagtgtttgtatatgttctctaagaaccaataataaatcccttgaacactcacaagcat |
300 |
Q |
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| T |
9385209 |
atgcttgaatcaccttttcttcttctacgtattgctgattgaagtgtttgtatatgttctctaagaaccaataataaatcccttgaacactcacaagcat |
9385308 |
T |
|
| Q |
301 |
ctagcaatgtgattgagctacacaatgaatctgatatgagttttccatcttggtaacgtagaagagattgttgagtttgtggagagttgaagagttcttc |
400 |
Q |
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| T |
9385309 |
ctagcaatgtgattgagctacacaatgaatctgatatgagttttccatcttggtaacgtagaagagattgttgagtttgtggagagttgaagagttcttc |
9385408 |
T |
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| Q |
401 |
catacaattgtaaatctctgcaagccctactaagtcactctgaattttctctgcttc |
457 |
Q |
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| T |
9385409 |
catacaattgtaaatctctgcaagccctactaagtcactctgaattttctctgcttc |
9385465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 31948094 - 31948271
Alignment:
| Q |
1 |
gtagtacagaacttaatatagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatga |
100 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948094 |
gtagcacaaaacttaatatagatatagtgattgtgtttacttctcttaaaaccctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatga |
31948193 |
T |
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| Q |
101 |
gttaactttgttctgcattttctttagctccaaaagttggtatgaaattttcttctttgccttctttctgaaattttc |
178 |
Q |
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| T |
31948194 |
gttaactttgctctgcattttctttagctccaaaaattggtatgaaattttcttctttgccttctttctgaaattttc |
31948271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 31455077 - 31454992
Alignment:
| Q |
368 |
ttgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgcaagccctactaagtcactctgaattttctctg |
453 |
Q |
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|||||| |||||| |||| | ||||||||||||||| |||||||| | ||| |||||| | || || ||||| |||||| |||||| |
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| T |
31455077 |
ttgttgtgtttgttgagattggaagagttcttccatgcaattgtataactcagcaagcacaaccaaatcactttgaattgtctctg |
31454992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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