View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_25 (Length: 453)

Name: NF11036_low_25
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_low_25
NF11036_low_25
[»] chr7 (12 HSPs)
chr7 (14-175)||(2335727-2335885)
chr7 (14-172)||(2319330-2319486)
chr7 (14-165)||(2326160-2326311)
chr7 (288-365)||(1087109-1087189)
chr7 (288-365)||(1559083-1559163)
chr7 (278-365)||(2319632-2319719)
chr7 (288-365)||(1594608-1594688)
chr7 (287-365)||(2336004-2336082)
chr7 (278-365)||(1543022-1543112)
chr7 (278-360)||(2327854-2327936)
chr7 (305-365)||(3851657-3851717)
chr7 (289-365)||(3956990-3957066)
[»] scaffold0491 (2 HSPs)
scaffold0491 (278-365)||(7790-7877)
scaffold0491 (315-365)||(3160-3213)
[»] chr8 (4 HSPs)
chr8 (278-365)||(18751414-18751504)
chr8 (315-365)||(18741354-18741407)
chr8 (315-365)||(18746318-18746371)
chr8 (288-365)||(18755528-18755608)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 2335727 - 2335885
Alignment:
Q  14 gaatgatgcaaaagagaaaacacatgtatccttcataaatgatgcttttaaattttttccaggttcacacaagacttttatatttaatgtcgtgacacat 113  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |||  ||||||| |||||||||||| |||| |||| | ||||    
T  2335727 gaatgatgcaaaagagaaaa-acatgtatccttcataaataatgctattaaattttt-ccatcttcacactagacttttatatctaatttcgtcaaacat 2335824  T
Q  114 atgtagcacaatcatgtgagtctaatcattaaatcgtactgaatattggtctgtgagaatga 175  Q
     |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  2335825 gtgtagcacaatcaa-tgagtctaatcattaaatcgtactgaatattggtctgtgagaatga 2335885  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 2319330 - 2319486
Alignment:
Q  14 gaatgatgcaaaagagaaaacacatgtatccttcataaatgatgcttttaaattttttccaggttcacacaagacttttatatttaatgtcgtgacacat 113  Q
    |||||||||||| ||||||| || ||| |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||| ||| ||||    
T  2319330 gaatgatgcaaaggagaaaa-acttgtctccttcataaatgatgctattaaatattttccatgttcacacaagacttttatatctaatgtcatgatacat 2319428  T
Q  114 atgtagcacaatcatgtgagtctaatcattaaatcgtactgaatattggtctgtgagaa 172  Q
     ||||| || ||||  |||||||||||||| |||||||| |||||||||||||||||||    
T  2319429 gtgtagtactatca-atgagtctaatcattcaatcgtaccgaatattggtctgtgagaa 2319486  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 2326160 - 2326311
Alignment:
Q  14 gaatgatgcaaaagagaaaacacatgtatccttcataaatgatgctttta-aattttttccaggttcacacaagacttttatat-ttaatgtcgtgacac 111  Q
    |||||||||| | ||||||  ||||||||||||| ||||||||||||||| | ||||||| | ||||||| ||||||||||| | | |||||||||||||    
T  2326160 gaatgatgcataggagaaat-acatgtatccttcgtaaatgatgcttttacatttttttctatgttcacataagacttttatttctaaatgtcgtgacac 2326258  T
Q  112 atatgtagcacaatcatgtgagtctaatcattaaatcgtactgaatattggtct 165  Q
    || |||||||| ||||  | ||||||||||||| ||||||| ||||||||||||    
T  2326259 atgtgtagcaccatca-attagtctaatcattatatcgtacagaatattggtct 2326311  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 1087109 - 1087189
Alignment:
Q  288 ctttcttcttatttgcagtttgatcgtgggaactcaat---ctaccacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    ||||||| |||||||||||||||| |||||||||||||   || |||| ||||||||||||| ||||||||||||||||||    
T  1087109 ctttcttattatttgcagtttgattgtgggaactcaatctgctgccactatgacatctcaacttcaaatggaagcaaatgc 1087189  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 1559163 - 1559083
Alignment:
Q  288 ctttcttcttatttgcagtttgatcgtgggaactcaat---ctaccacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    ||||||| |||||||||||||||| |||||||||||||   || ||||  |||||||||||| ||||||||||||||||||    
T  1559163 ctttcttattatttgcagtttgattgtgggaactcaatccgctgccactgtgacatctcaacttcaaatggaagcaaatgc 1559083  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 2319632 - 2319719
Alignment:
Q  278 tgtgggtgctctttcttcttatttgcagtttgatcgtgggaactcaatctaccacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    ||||| || ||||||||||||||||   ||| || ||||| ||||||||| || || |||||||||||||||| ||||||||||||||    
T  2319632 tgtggatggtctttcttcttatttggcctttcattgtgggtactcaatctgcctcagtgacatctcaacctcatatggaagcaaatgc 2319719  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 1594608 - 1594688
Alignment:
Q  288 ctttcttcttatttgcagtttgatcgtgggaactcaatctaccacaatgacatctc---aacctcaaatggaagcaaatgc 365  Q
    ||||||||||||||||||| |||  ||||||||||||||| ||| || ||||||||   ||| ||||||||||||||||||    
T  1594608 ctttcttcttatttgcagtctgactgtgggaactcaatctgccaaaacgacatctcataaacttcaaatggaagcaaatgc 1594688  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 2336004 - 2336082
Alignment:
Q  287 tctttcttcttatttgcagtttgatcgtgggaactcaatctaccacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    ||||||||||||| || | ||| || || || ||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  2336004 tctttcttcttatctggattttcattgtaggtactcaatctgccacaatgaaatctcaacttcaaatggaagcaaatgc 2336082  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 1543112 - 1543022
Alignment:
Q  278 tgtgggtgctctttcttcttatttgcagtttgatcgtgggaactcaatctac---cacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    ||||| |||||||| ||| || |||| ||||||| || ||||||||||||||   |||  |||||||||||| ||||||||||||||||||    
T  1543112 tgtggatgctcttttttcctacttgcggtttgattgtcggaactcaatctactcccactgtgacatctcaacttcaaatggaagcaaatgc 1543022  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 2327854 - 2327936
Alignment:
Q  278 tgtgggtgctctttcttcttatttgcagtttgatcgtgggaactcaatctaccacaatgacatctcaacctcaaatggaagca 360  Q
    |||||||| |||||||||||| |||  |||||||| |||| |||| ||||    ||||||||||||||| |||||||||||||    
T  2327854 tgtgggtggtctttcttcttacttggggtttgatcatggggactcgatctggggcaatgacatctcaacttcaaatggaagca 2327936  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 3851657 - 3851717
Alignment:
Q  305 gtttgatcgtgggaactcaatctaccacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    ||||| || |||| ||||||| | ||| | |||||||||||| ||||||||||||||||||    
T  3851657 gtttgttcatggggactcaatttgccatagtgacatctcaacttcaaatggaagcaaatgc 3851717  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 3957066 - 3956990
Alignment:
Q  289 tttcttcttatttgcagtttgatcgtgggaactcaatctaccacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    |||||||||| |||  ||||| || |||| ||||||| |  || | |||||||||||| ||||||||||||||||||    
T  3957066 tttcttcttacttggggtttgttcatggggactcaatttgtcatagtgacatctcaacttcaaatggaagcaaatgc 3956990  T

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Target: scaffold0491 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 7877 - 7790
Alignment:
Q  278 tgtgggtgctctttcttcttatttgcagtttgatcgtgggaactcaatctaccacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    ||||| || ||||||||||||||||| ||||| | | ||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  7877 tgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcaacttcaaatggaagcaaatgc 7790  T

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Target: scaffold0491; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 3213 - 3160
Alignment:
Q  315 gggaactcaatctaccacaatgacatc---tcaacctcaaatggaagcaaatgc 365  Q
    ||||||||||||| |||||||||||||   ||||| ||||||||||||||||||    
T  3213 gggaactcaatctgccacaatgacatctcatcaacttcaaatggaagcaaatgc 3160  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 18751504 - 18751414
Alignment:
Q  278 tgtgggtgctctttcttcttatttgcagtttgatcgtgggaactcaatctaccacaatgacatc---tcaacctcaaatggaagcaaatgc 365  Q
    ||||| || ||||||||||||||||| ||||| | | ||||||||||||| |||||||||||||   ||||| ||||||||||||||||||    
T  18751504 tgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgccacaatgacatctcatcaacttcaaatggaagcaaatgc 18751414  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 18741407 - 18741354
Alignment:
Q  315 gggaactcaatctaccacaatgacatc---tcaacctcaaatggaagcaaatgc 365  Q
    ||||||||||||| |||||||||||||   ||||| ||||||||||||||||||    
T  18741407 gggaactcaatctgccacaatgacatctcatcaacttcaaatggaagcaaatgc 18741354  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 18746371 - 18746318
Alignment:
Q  315 gggaactcaatctaccacaatgacatc---tcaacctcaaatggaagcaaatgc 365  Q
    ||||||||||||| |||||||||||||   ||||| ||||||||||||||||||    
T  18746371 gggaactcaatctgccacaatgacatctcatcaacttcaaatggaagcaaatgc 18746318  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 18755608 - 18755528
Alignment:
Q  288 ctttcttcttatttgcagtttgatcgtgggaactcaatcta---ccacaatgacatctcaacctcaaatggaagcaaatgc 365  Q
    |||||||||||||||  || |||||| |||||||||||||    | |||||||||| ||||  ||||||||||||||||||    
T  18755608 ctttcttcttatttggggtgtgatcgagggaactcaatcttttgctacaatgacatatcaatttcaaatggaagcaaatgc 18755528  T

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