View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_26 (Length: 442)
Name: NF11036_low_26
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_26 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 8351273 - 8350894
Alignment:
| Q |
15 |
aagaagttgagtccttacaaagaataattgttattgaagcatcccc-gtttacttcacttttatattatttaataaatctggcactag-catagtcacaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
8351273 |
aagaagttgagtccttacaaagaataattgttattgaagcatcccccgttcacttcacttttatattatttaataaatctggtaataggcatagtcacaa |
8351174 |
T |
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| Q |
113 |
tagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgacatcgttgtagtgtatttcttctctaatg |
212 |
Q |
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| T |
8351173 |
tagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgatatcgttgtagtgtatttcttctctaatg |
8351074 |
T |
|
| Q |
213 |
agttgataggcgaataagaaacttatcagcaatcattcttggggtagatatgaaatttgaaactaagggaatacctatgtttcaaatttatcatctatca |
312 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
8351073 |
agttgataggcgaatgagaaacttatcagcaatcattcttgtggtagatatgaaatttgaaactaagggaatacctatgtttcaaatttattatttatca |
8350974 |
T |
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| Q |
313 |
ctactgtttgttgataacttttctaatg-ccttgtgataaaaaagaaaaattacttcaaagaccttttcggaacaaaggc |
391 |
Q |
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| T |
8350973 |
ctactgtttgttgataacttttctaatgcccttgtgataaaaaagaaaaattacttcaaagaccttttcggaacaaaggc |
8350894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 8412493 - 8412344
Alignment:
| Q |
79 |
ttatttaataaatctggcactagcatagtcacaa--------tagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataa |
170 |
Q |
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| T |
8412493 |
ttatttaataaatctcgcaatagcatagtcacaaactcacagtaaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataa |
8412394 |
T |
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| Q |
171 |
aaacagcgcatgacatcgttgtagtgtatttcttctctaatgagttgatagg |
222 |
Q |
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| T |
8412393 |
aagcaacgcat-atatcgttgtagtgtattac-tctctaatgagatgatagg |
8412344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 8451809 - 8451736
Alignment:
| Q |
81 |
atttaataaatctggcactagcatagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagag |
154 |
Q |
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| T |
8451809 |
atttaataaatctggcaatagcatactcacagtagacaaaaagtcccacatcaaaaactttcaataatagagag |
8451736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 8479328 - 8479415
Alignment:
| Q |
99 |
tagcatagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgacat |
186 |
Q |
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| T |
8479328 |
tagcatattcacaatagacaaaaagtcccacttcgaacactttgtacaatataaagagcaggtttcctataaaagcagcgtatgacat |
8479415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 375
Target Start/End: Complemental strand, 8412300 - 8412216
Alignment:
| Q |
292 |
tttcaaatttatcatctatcac-tactgtttgttgataacttttctaatgccttgtgataaaaaa-gaaaaattacttcaaagacc |
375 |
Q |
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| T |
8412300 |
tttcaaatttaccattaatcacgtattgtttgtttataacttctttaatgcct-gtgataaaaaaagaaaaattacttcaaagacc |
8412216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 8358903 - 8358837
Alignment:
| Q |
120 |
aaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgacatc |
187 |
Q |
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| T |
8358903 |
aaagtcccacatcgaaaa-tttctacaatataaagagtaagttggctataaaagcagcgcatggcatc |
8358837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 8426866 - 8426785
Alignment:
| Q |
102 |
catagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgaca |
185 |
Q |
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| T |
8426866 |
catagtcacaatagatacaaagccccacatcgaaaactttttaaattataga--gtaagtttcctattaaagcagcgcatgaca |
8426785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 8479519 - 8479574
Alignment:
| Q |
317 |
tgtttgttgataacttttctaatgccttgtgataaaaaagaaaaattacttcaaaga |
373 |
Q |
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| T |
8479519 |
tgtttgtttataagttctctaattcctt-tgataaaaatgaaaaattacttcaaaga |
8479574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 10101 - 10137
Alignment:
| Q |
196 |
gtatttcttctctaatgagttgataggcgaataagaa |
232 |
Q |
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| T |
10101 |
gtattacttctctaatgagttgataggcgaattagaa |
10137 |
T |
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