View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_28 (Length: 427)
Name: NF11036_low_28
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 220 - 420
Target Start/End: Complemental strand, 4393536 - 4393336
Alignment:
| Q |
220 |
ttggagatggcgaagcttatgcttgcttcttgatttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4393536 |
ttggagatggcgaagcttatgcttgcttcttgatttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgcc |
4393437 |
T |
|
| Q |
320 |
ctaatcttccttatttcttctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccacctttgct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4393436 |
ctaatcttccttatttcttctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggct |
4393337 |
T |
|
| Q |
420 |
t |
420 |
Q |
| |
|
| |
|
|
| T |
4393336 |
t |
4393336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 4393737 - 4393601
Alignment:
| Q |
19 |
attaggcacaacatcattgatgttagggaaaccaagggaaaatactttggcaggtattaattcttttggtggagatttctcagaggaagatgaagaagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4393737 |
attaggcacaacatcattgatgttagggaaaccaagggaaaatactttggcaggtattaattcttttggtggagatttctcagaggaagatgaagaagat |
4393638 |
T |
|
| Q |
119 |
gagggtacagtagcagaaatttgagaaagtgaattag |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4393637 |
gagggtacagtagcagaaatttgagaaagtgaattag |
4393601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 420
Target Start/End: Complemental strand, 8284525 - 8284359
Alignment:
| Q |
254 |
ttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattca |
353 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||||||||||||| ||||||| || ||| | | |||||| | ||||| || |||||||| |||| |
|
|
| T |
8284525 |
ttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaattgttcacgtatcttcgtaatttcctcccttggtgggttca |
8284426 |
T |
|
| Q |
354 |
ccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccacctttgctt |
420 |
Q |
| |
|
|||| || || ||||| || ||||| || ||||| ||||||| ||||||||| ||||| ||| |||| |
|
|
| T |
8284425 |
ccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctt |
8284359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 33813272 - 33813190
Alignment:
| Q |
333 |
tttcttctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccacctt |
415 |
Q |
| |
|
|||||||| |||| ||||||||||| ||| |||||||| | ||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
33813272 |
tttcttcttttgggggattcaccatgccactgttgaagatggactcaagtatgagaatttgttctggttttggtgtccacctt |
33813190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University