View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_29 (Length: 417)
Name: NF11036_low_29
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 9384827 - 9385225
Alignment:
| Q |
19 |
accttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacatcatttttgttcttcccttctttc |
118 |
Q |
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| T |
9384827 |
accttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacctcatttttgttcttcccttctttc |
9384926 |
T |
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| Q |
119 |
tcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagnnnnnnnnngtagtacagaacttaata |
218 |
Q |
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| T |
9384927 |
tcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagaaaaaaaaagtagtacagaacttaata |
9385026 |
T |
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| Q |
219 |
tagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatgagttaactttgttctgcat |
318 |
Q |
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| T |
9385027 |
tagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatgagttaactttgttctgcat |
9385126 |
T |
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| Q |
319 |
tttctttagctccaaaagttggtatgaaattttcttctttgccttctttctgaaattttcataagaagaaacactgttttcaatgcttgaatcaccttt |
417 |
Q |
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| T |
9385127 |
tttctttagctccaaaagttggtatgaaattttcttccttgccttctttctgaaattttcataagaagaaacactgttttcaatgcttgaatcaccttt |
9385225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 31947913 - 31948271
Alignment:
| Q |
19 |
accttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacatcatttttgttcttcccttctttc |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
31947913 |
accttcactattagaataatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacctcatttttgttcttccc-tctttc |
31948011 |
T |
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| Q |
119 |
tcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagnnnnnnnnngtagtacagaacttaata |
218 |
Q |
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| T |
31948012 |
tcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagacaaaaaaagtagcacaaaacttaata |
31948111 |
T |
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| Q |
219 |
tagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatgagttaactttgttctgcat |
318 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31948112 |
tagatatagtgattgtgtttacttctcttaaaaccctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatgagttaactttgctctgcat |
31948211 |
T |
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| Q |
319 |
tttctttagctccaaaagttggtatgaaattttcttctttgccttctttctgaaattttc |
378 |
Q |
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| T |
31948212 |
tttctttagctccaaaaattggtatgaaattttcttctttgccttctttctgaaattttc |
31948271 |
T |
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