View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_3 (Length: 777)
Name: NF11036_low_3
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 341
Target Start/End: Original strand, 8320795 - 8321128
Alignment:
| Q |
4 |
aatgacatggatagtcggatttggattcttagcaattcatacaatcatgcaaccgtagatagaatacttgattgagattgaatagtttatgtttaaactt |
103 |
Q |
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| T |
8320795 |
aatgacatcgatagtcggatttggattcttagcaattcatacaatcatgcaatcgaagatagaatactagattgagattgaatagtttatgtttaaactt |
8320894 |
T |
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| Q |
104 |
ttttattttgaaatgaatattaagttaaaatattagccatccaattttgattcgacgatctagattgtgtgaaatgaatgattttgtaattgtagataat |
203 |
Q |
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| T |
8320895 |
ttttattttgaaatgaatattaagttaaaatattggccatttaattttgattcgacgatctagattatgtgaaatgaatgattttgtaattgtagataat |
8320994 |
T |
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| Q |
204 |
atgatttcaacaaatacttcatcaatacnnnnnnnnaacacgttttctattattgaatgaaatttatgtgaatattttacgatctagtatacatctcatt |
303 |
Q |
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| T |
8320995 |
ttaatttcaacaaatacttcatcaatac-tttttttaacacattttttattattgaatgaaatttatgtgaatattttacg---tcatatacatctcatt |
8321090 |
T |
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| Q |
304 |
cctatttgtcgtgcacattctcaaaatatttatatcta |
341 |
Q |
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| T |
8321091 |
cctatttatcgtgcatattcccaaaatatttatatcta |
8321128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 488 - 760
Target Start/End: Original strand, 8321291 - 8321563
Alignment:
| Q |
488 |
tttttattgcttctcaaccttgacaagatgttttgatcggttgatttgaagtatgtatcaaattcattttgatacgagaagagatttgatgattgtgctt |
587 |
Q |
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| T |
8321291 |
tttttattgcttctcaaccttgacaagatgttttgatcggttggtttgaagtatgtatcaaattcattttgatacgagaagagattagatgattgtgctt |
8321390 |
T |
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| Q |
588 |
gttgctaaactatcaaataaaggataaataaactgtcacaaagaagttacattggttcactctaactaggctagcccaatctccataaaatgtgagatta |
687 |
Q |
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| T |
8321391 |
gttgcaaaactatcaaataaaggataaagaagctgtcacaaagaagttacattggttcactctaactaggctagaacagtccccataaaatgtgagatta |
8321490 |
T |
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| Q |
688 |
tccaataatggtgtctaagatacctctcaaatgttgcacactttctcttcatttctggtatccttgaccttac |
760 |
Q |
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| T |
8321491 |
tctaataatggtgtctgagatacctctcagatgttgcacactttctcttcatttctggtctccttgaccttac |
8321563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 608
Target Start/End: Complemental strand, 24226603 - 24226552
Alignment:
| Q |
557 |
tgatacgagaagagatttgatgattgtgcttgttgctaaactatcaaataaa |
608 |
Q |
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| T |
24226603 |
tgatacaataagagatttgatgattgtgcttgcttctaaactatcaaataaa |
24226552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 17748366 - 17748317
Alignment:
| Q |
535 |
gaagtatgtatcaaattcattttgatacgagaagagatttgatgattgtg |
584 |
Q |
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| T |
17748366 |
gaagtatgtatcaaaatgaatttgatacaagaagagattggatgattgtg |
17748317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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