View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_33 (Length: 397)
Name: NF11036_low_33
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_33 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 46763769 - 46763373
Alignment:
| Q |
1 |
tgtagagactcagaagtgtgagtagggactaaaagcagaatttgagataattatatgaactaaaaacatatttaacggaacaattattgccaatttcggg |
100 |
Q |
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| T |
46763769 |
tgtagagactcagaagtgtgagtagggactaaaagcagaatttgagataattatatgaactaaaaacatatttaaccgaacaattattgccaatttcggg |
46763670 |
T |
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| Q |
101 |
agaagactataaatgtcgtcaagcaacaattcttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttg |
200 |
Q |
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| T |
46763669 |
agaagactataaatgtcgtcaagcaacaattcttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttg |
46763570 |
T |
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| Q |
201 |
gtggggatcttccagctacattccatgttgctacaaaaatgctgctcaatgttcacaattcatgagaaacagaacaaagccttttattttatttttcttg |
300 |
Q |
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| T |
46763569 |
gtggggatcttccagctacattccatgttgctacaaaaatgctgctcaatgttcacaattcatgagaaacagaacaaagccttttattttatttttcttg |
46763470 |
T |
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| Q |
301 |
gtaaaattgaagtaggatacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgct |
397 |
Q |
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| T |
46763469 |
gtaaaattgaagtaggatacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgct |
46763373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 31829412 - 31829319
Alignment:
| Q |
132 |
cttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattcca |
225 |
Q |
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| T |
31829412 |
cttaccctagaacataaatatcagcaggaggagatgtatgaagccaatcttccagatttaaataactcggaggagatcgtccagctacattcca |
31829319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 1084013 - 1083899
Alignment:
| Q |
134 |
tacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattccatgttgcta |
233 |
Q |
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| T |
1084013 |
tacccaagaacataaatatctgcaggcggtgaggcgtgaagccaatcgtttatgctcaaattactcggcggggatcttccggccacattccatgtaccaa |
1083914 |
T |
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| Q |
234 |
caaaaatgctgctca |
248 |
Q |
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| T |
1083913 |
caaaaatgctgctca |
1083899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 1083826 - 1083746
Alignment:
| Q |
317 |
atacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgct |
397 |
Q |
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| T |
1083826 |
atacctatagttatggacatctataattctaggatggtcaaggttcatcctcgctcgcctaacctgactcgagttcctgct |
1083746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 28315234 - 28315283
Alignment:
| Q |
27 |
gactaaaagcagaatttgagataattatatgaactaaaaacatatttaac |
76 |
Q |
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| T |
28315234 |
gactaaaagcaaaatttgatatatttatatggactaaaaacatttttaac |
28315283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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