View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_35 (Length: 384)
Name: NF11036_low_35
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 22 - 372
Target Start/End: Complemental strand, 34459191 - 34458841
Alignment:
| Q |
22 |
tgcttctctttcaccgagcctatgctcatgaccttcaagagatccttgcaactccccaaacttcatttctacaatattctttgattcttcaatggccaca |
121 |
Q |
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| T |
34459191 |
tgcttctctttcaccgagcctatgctcatgaccttcaagagatccttgcaactcctcaaacttcatttctacaatattctttgattcttcaatggccaca |
34459092 |
T |
|
| Q |
122 |
acaaggtggtgaagtcttgatgtcaatcttctcaagatattatcaactatcacctgatgtgagaccttttcaccttcttcagtttgtcaactccagcata |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34459091 |
acaaggtggtgaagtcttgatgtcaatcttctcaagatattatcaactatcacctgatgtgagaccttttcaccttcttcagtttgtcaactccagcata |
34458992 |
T |
|
| Q |
222 |
ggacattgataaaataatatcccatgcatcctttgatgtttcaaccattgcaatctcttcaaagtttgatgcatctacacactggtcaagaataaattgt |
321 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34458991 |
ggacattgaaaaaataatatcccatgcatcctttgatgtttcaaccattgcaatctcttcaaagtttgatgcatctacacactggtcgagaataaattgt |
34458892 |
T |
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| Q |
322 |
ccttcatatcccttcttctttgcctccttgtatgttgctttctcttcatct |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34458891 |
gcttcatatcccttcttctttgcctccttgtatgttgctttctcttcatct |
34458841 |
T |
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