View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_36 (Length: 380)

Name: NF11036_low_36
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_low_36
NF11036_low_36
[»] chr1 (1 HSPs)
chr1 (1-362)||(51150646-51150996)
[»] scaffold0055 (8 HSPs)
scaffold0055 (86-362)||(15384-15661)
scaffold0055 (86-362)||(39497-39774)
scaffold0055 (86-362)||(48745-49022)
scaffold0055 (101-362)||(73612-73874)
scaffold0055 (86-362)||(60071-60348)
scaffold0055 (86-362)||(64368-64645)
scaffold0055 (86-353)||(26916-27184)
scaffold0055 (86-343)||(30486-30744)
[»] scaffold0052 (8 HSPs)
scaffold0052 (86-362)||(14455-14732)
scaffold0052 (86-362)||(23270-23547)
scaffold0052 (86-362)||(32429-32706)
scaffold0052 (86-362)||(37283-37560)
scaffold0052 (86-362)||(45664-45941)
scaffold0052 (86-362)||(60343-60620)
scaffold0052 (86-353)||(68881-69149)
scaffold0052 (86-343)||(65321-65579)
[»] scaffold0021 (3 HSPs)
scaffold0021 (99-352)||(60898-61151)
scaffold0021 (86-353)||(41170-41437)
scaffold0021 (239-362)||(88945-89069)
[»] scaffold0152 (2 HSPs)
scaffold0152 (205-362)||(26706-26864)
scaffold0152 (206-362)||(35482-35639)
[»] scaffold0515 (1 HSPs)
scaffold0515 (206-362)||(9085-9242)
[»] chr7 (1 HSPs)
chr7 (209-265)||(29927925-29927981)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 51150996 - 51150646
Alignment:
Q  1 tgtacttatctaaatttcatattgagtaatatgnnnnnnn-tcagtgttattatggaagagttttcttgttgcgttggctttaccagatgcatctcatta 99  Q
    |||||||||||||||||||||| ||||| ||||        |||| |||||||||| ||||||||||||||||| ||||||||||  |||||||||||||    
T  51150996 tgtacttatctaaatttcatatcgagtagtatgaaaaaaaatcagcgttattatgggagagttttcttgttgcgctggctttaccctatgcatctcatta 51150897  T
Q  100 ttggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgattagtctttcacccct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||                 
T  51150896 ttggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaactaattactacacggttcgctta------------- 51150810  T
Q  200 atacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacatagttcaccatcttt 299  Q
    |||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51150809 atactcaagtcagatgaacgatttgcatgtcagtatctctgcgggcctccaccaaagtttcctctgccttcttcccgctcagacatagttcaccatcttt 51150710  T
Q  300 tg-gtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  51150709 tgtgtcccgacatgtatgctctcgcttgaacccttcacagaagatcagggtcgattgacggtgc 51150646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 362
Target Start/End: Complemental strand, 15661 - 15384
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  15661 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatccagagggaaacttcggagggaaccagctactagacggttcgatt 15562  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  15561 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 15462  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  15461 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 15384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 39497 - 39774
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  39497 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagctactagacggttcgatt 39596  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  39597 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 39696  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  39697 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 39774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 48745 - 49022
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  48745 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagctactagacggttcgatt 48844  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  48845 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 48944  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  48945 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 49022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 101 - 362
Target Start/End: Complemental strand, 73874 - 73612
Alignment:
Q  101 tggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgattagtctttcaccccta 200  Q
    |||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | ||||||||||||||||| ||||||    
T  73874 tggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagctactagacggttcgattagtctttcgccccta 73775  T
Q  201 tacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacatagttcaccatcttt- 299  Q
    |||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||||||||||||||||     
T  73774 tacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcatagttcaccatctttc 73675  T
Q  300 tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
     |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  73674 gggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 73612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 60071 - 60348
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||   ||||||||||| || ||||  || ||||| | |||||||||    
T  60071 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctaagggaaacttcggagggaaccagctactagacggttcgatt 60170  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  60171 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 60270  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  60271 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 60348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 64368 - 64645
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  64368 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagctactagacggttcgatt 64467  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  || |||||||||||| ||||||||||| ||||  ||||||||| |||    
T  64468 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgtgggcctccaccagagtttcctctggcttcgccccgctcaggcat 64567  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  64568 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 64645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 86 - 353
Target Start/End: Complemental strand, 27184 - 26916
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  ||  |||| | |||||||||    
T  27184 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagcaactagacggttcgatt 27085  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  27084 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 26985  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggt 353  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| |||||||||||||||    
T  26984 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggt 26916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 86 - 343
Target Start/End: Original strand, 30486 - 30744
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| |||| || ||||  | |||| ||||| || ||||  || ||||| | |||||||||    
T  30486 gatgcctctaatcattggctttacccgatagaactcgccctcgggctctagatatcctgggggatacttcggagggaaccagctactagacggttcgatt 30585  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    || ||||| |||||||||||||||||||||||||||||||| || ||||||  ||||| ||||||||| ||||||||||| ||||  ||||||||| |||    
T  30586 agcctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcggacctccaccagagtttcctctggcttcgccccgctcaggcat 30685  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagat 343  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| |||||    
T  30686 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagat 30744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 14455 - 14732
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  14455 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagctactagacggttcgatt 14554  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  14555 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 14654  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  14655 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 14732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 23270 - 23547
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  23270 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagctactagacggttcgatt 23369  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  23370 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 23469  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  23470 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 23547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 362
Target Start/End: Complemental strand, 32706 - 32429
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  32706 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagctactagacggttcgatt 32607  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  32606 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 32507  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  32506 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 32429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 362
Target Start/End: Complemental strand, 37560 - 37283
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  37560 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatccagagggaaacttcggagggaaccagctactagacggttcgatt 37461  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  37460 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 37361  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  37360 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 37283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 45664 - 45941
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||   ||||||||||| || ||||  || ||||| | |||||||||    
T  45664 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctaagggaaacttcggagggaaccagctactagacggttcgatt 45763  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  45764 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 45863  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  45864 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 45941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 86 - 362
Target Start/End: Original strand, 60343 - 60620
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  || ||||| | |||||||||    
T  60343 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagctactagacggttcgatt 60442  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  || |||||||||||| ||||||||||| ||||  ||||||||| |||    
T  60443 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgtgggcctccaccagagtttcctctggcttcgccccgctcaggcat 60542  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  60543 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggtcggcggtgc 60620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 86 - 353
Target Start/End: Original strand, 68881 - 69149
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| ||||||||||||  |||||||||||| || ||||  ||  |||| | |||||||||    
T  68881 gatgcctctaatcattggctttacccgatagaactcgccctcgggctccagctatcctgagggaaacttcggagggaaccagcaactagacggttcgatt 68980  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  ||||||||| |||    
T  68981 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcgggcctccaccagagtttcctctggcttcgccccgctcaggcat 69080  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggt 353  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| |||||||||||||||    
T  69081 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagatcggggtcggt 69149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 86 - 343
Target Start/End: Complemental strand, 65579 - 65321
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||| | ||||||||||| | ||| |||| || ||||  | |||| ||||| || ||||  || ||||| | |||||||||    
T  65579 gatgcctctaatcattggctttacccgatagaactcgccctcgggctctagatatcctgggggatacttcggagggaaccagctactagacggttcgatt 65480  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    || ||||| |||||||||||||||||||||||||||||||| || ||||||  ||||| ||||||||| ||||||||||| ||||  ||||||||| |||    
T  65479 agcctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtatcgctgcggacctccaccagagtttcctctggcttcgccccgctcaggcat 65380  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagat 343  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||||||| |||||    
T  65379 agttcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcacaaaagat 65321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 99 - 352
Target Start/End: Original strand, 60898 - 61151
Alignment:
Q  99 attggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgattagtctttcacccc 198  Q
    |||||||||| |||||||||||||  || | ||||||||||||  |||||||||||| || ||||  || ||||| ||||||||||||||||||| ||||    
T  60898 attggctttacctgatagaactcgtaatgg-gctccagctatcctgagggaaacttcggagggaaccagctactagatggttcgattagtctttcgcccc 60996  T
Q  199 tatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacatagttcaccatctt 298  Q
    |||||||||||||||||||||||||||| || ||||||  | || |||||||||| ||||||||||| ||||  ||||||||| ||||||||||||||||    
T  60997 tatacccaagtcagacgaacgatttgcacgtcagtatcgcttcgagcctccaccagagtttcctctggcttcgccccgctcaggcatagttcaccatctt 61096  T
Q  299 t-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcgg 352  Q
    |  |||||||||| |  |||||   || ||||||||||||||||||| |||||||    
T  61097 tcgggtcccgacaggcgtgctccaactcgaacccttcacagaagatcagggtcgg 61151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 86 - 353
Target Start/End: Original strand, 41170 - 41437
Alignment:
Q  86 gatgcatctcattattggctttatctgatagaactcgacatcgagctccagctatctcgagggaaacttcagatggaattagttactacatggttcgatt 185  Q
    ||||| ||| || |||||||||  | |||| |||||| | ||| ||||||||||||  |||||||| ||| || ||||  || ||||| | |||||||||    
T  41170 gatgcctctaatcattggctttgcccgataaaactcgccctcgggctccagctatcctgagggaaaattcggagggaaccagctactagacggttcgatt 41269  T
Q  186 agtctttcacccctatacccaagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacat 285  Q
    |||||||| |||||||||||||||||||||||||||||||| || |||||   ||||||||||||| | ||||||||||| |||   |||||| || |||    
T  41270 agtctttcgcccctatacccaagtcagacgaacgatttgcacgtcagtattgctgcgggcctccactagagtttcctctggctt-ggcccgcttaggcat 41368  T
Q  286 agttcaccatcttt-tggtcccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggt 353  Q
    || |||||||||||  |||||||||| |||||||||| || |||||||||| | |||||||||||||||    
T  41369 agatcaccatctttcgggtcccgacaggtatgctctcactcgaacccttcaaaaaagatcggggtcggt 41437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 88945 - 89069
Alignment:
Q  239 tgcgggcctccaccaaagtttcctctgccttcttcccgctcagacatagttcaccatctttt-ggtcccgacatgtatgctctcgcttgaacccttcaca 337  Q
    ||||||||||||||| ||||||||||| ||||  | ||||||| |||||||||||||||||| |||| ||||| |||||||||| || ||||||||||||    
T  88945 tgcgggcctccaccagagtttcctctggcttcgcctcgctcaggcatagttcaccatcttttgggtcacgacaggtatgctctcactcgaacccttcaca 89044  T
Q  338 gaagatcggggtcggttgacggtgc 362  Q
     ||||| ||||||||| | ||||||    
T  89045 aaagataggggtcggtcggcggtgc 89069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 205 - 362
Target Start/End: Complemental strand, 26864 - 26706
Alignment:
Q  205 caagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacatagttcaccatcttttg-gt 303  Q
    |||||||||||||| ||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  | ||||||| ||||||||||||||||| | ||    
T  26864 caagtcagacgaacaatttgcaagtcagtatcgctgcgggcctccaccagagtttcctctggcttcgcctcgctcaggcatagttcaccatctttcgagt 26765  T
Q  304 cccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
    | ||||| ||||||||||  | |||||||||||| ||||||||||||||| | ||||||    
T  26764 ctcgacaggtatgctctcattcgaacccttcacaaaagatcggggtcggtcggcggtgc 26706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 362
Target Start/End: Complemental strand, 35639 - 35482
Alignment:
Q  206 aagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacatagttcaccatcttttg-gtc 304  Q
    ||||||||||||| ||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  | ||||||| ||||||||||||||||| | |||    
T  35639 aagtcagacgaacaatttgcaagtcagtatcgctgcgggcctccaccagagtttcctctggcttcgcctcgctcaggcatagttcaccatctttcgagtc 35540  T
Q  305 ccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
     ||||| ||||||||||  | |||||||||||| ||||||||||||||| | ||||||    
T  35539 tcgacaggtatgctctcattcgaacccttcacaaaagatcggggtcggtcggcggtgc 35482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 362
Target Start/End: Complemental strand, 9242 - 9085
Alignment:
Q  206 aagtcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctgccttcttcccgctcagacatagttcaccatcttttg-gtc 304  Q
    ||||||||||||| ||||||| || ||||||  ||||||||||||||| ||||||||||| ||||  | ||||||| ||||||||||||||||| | |||    
T  9242 aagtcagacgaacaatttgcaagtcagtatcgctgcgggcctccaccagagtttcctctggcttcgcctcgctcaggcatagttcaccatctttcgagtc 9143  T
Q  305 ccgacatgtatgctctcgcttgaacccttcacagaagatcggggtcggttgacggtgc 362  Q
     ||||| ||||||||||  | |||||||||||| ||||||||||||||| | ||||||    
T  9142 tcgacaggtatgctctcattcgaacccttcacaaaagatcggggtcggtcggcggtgc 9085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 29927925 - 29927981
Alignment:
Q  209 tcagacgaacgatttgcatgttagtatctttgcgggcctccaccaaagtttcctctg 265  Q
    |||||||||||||||||| ||||||||| ||||  | |||||||| |||| ||||||    
T  29927925 tcagacgaacgatttgcacgttagtatcgttgcaagactccaccagagttccctctg 29927981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University