View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_37 (Length: 380)
Name: NF11036_low_37
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 3934896 - 3934535
Alignment:
| Q |
17 |
agagaaatgacaaagattttcctatttggtaatccaatcatgtctggtcactttcttaaaatttctatccattaggtattttatgtaatttgagacgcgt |
116 |
Q |
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| T |
3934896 |
agagaaatgacaaagattttcctatttggtaatccaatcatgtctggtcactttcttaaaatttctatccattaggtattttatgtaatttgaggcgcgt |
3934797 |
T |
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| Q |
117 |
cggatactaaatatatgattgtagtgccaatctgaaaaattttaatcagaagagcctgtgtttttgcctaaacacaccatcatcaagataacattttgat |
216 |
Q |
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| T |
3934796 |
tggatactaaatatatgattgcagtgccaatctgaaaaattataatcagaaaaacctgtgttttagcctaaacacaccatcatcaggataacattttgat |
3934697 |
T |
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| Q |
217 |
ttcatctattaccttcttaatttctagcgtaatcaccctaaacattattccatttcagtttgtccaaatgcaccatgtatgttgatgccaaatatatcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3934696 |
ttcatctattaccttcttaatttctagcgtaatcaccctaaacattattccatttcagtttgtccaaatgcaccatgtatcttgatgccaaatatatcat |
3934597 |
T |
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| Q |
317 |
ttacgtgtagatatcctcgcttaattgataaaaatgtcgaaattattaggttggacgtctgg |
378 |
Q |
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| T |
3934596 |
ttacgtgtagatatcctagcttaattgataaaaatgtcgaaattattaagttggacgcctgg |
3934535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 364
Target Start/End: Original strand, 32698370 - 32698398
Alignment:
| Q |
336 |
cttaattgataaaaatgtcgaaattatta |
364 |
Q |
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| T |
32698370 |
cttaattgataaaaatgtcgaaattatta |
32698398 |
T |
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