View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_39 (Length: 366)
Name: NF11036_low_39
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 45375432 - 45375072
Alignment:
| Q |
1 |
ggttgaccatatagattgacacaagtagctagtttgccacatggaaaaatgaagggtcaacagataaagcaaagggcattttggtcttacacaataaatt |
100 |
Q |
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| T |
45375432 |
ggttgaccatatagattgacacaagtagctagtttgccacatagaaaaatgaagggccaacagataaagcaaagggcattttggtcttacacaataaatt |
45375333 |
T |
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| Q |
101 |
ctctctgcgatcccagagttccagctttcttcacaaacccgtatgaaaatcatttgtggtagtgcctcaagctttggtcattttgaatggttttcaaaag |
200 |
Q |
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| T |
45375332 |
ctctctgcgatcccagagttccagctttcttcacaaacccgtatgaaaatcatttgtggtagtgcctcaagctttggtcattttgaatggttttcaaaag |
45375233 |
T |
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| Q |
201 |
gtaatattgtactaaatggaagaggtaaaaatttgacaacacgatgtttggcattgaagggaataaaaacccaaaacatcacaaataaataatgggttgg |
300 |
Q |
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| T |
45375232 |
gtaatattgtactaaatggaagaggtaaaaatttgacaacacaatgtttggcattgaagggaataaaaacccaaaacatcacaaataaataatgggttgg |
45375133 |
T |
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| Q |
301 |
gaaccaaaaaatttagagtcaaatacaggtagtaatatcaatttctatagcctatgctact |
361 |
Q |
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| T |
45375132 |
gaaccaaaaaatttagagtcaaatacaggtagtaatatcaatttttatagcttatgttact |
45375072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 347
Target Start/End: Complemental strand, 45371880 - 45371716
Alignment:
| Q |
173 |
tttggtcattttgaatggttttcaaaaggtaatattgtactaaatggaagaggtaaaaatttgacaacacgatgtttggcattgaagggaataaaaaccc |
272 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| | |||||| |||| ||||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
45371880 |
tttggtcattttgagttgttttcaaaaggtaatattgtaccagatggaacaggtcaaaatttgacaacacaatgtttgccattga---gaataaaaacct |
45371784 |
T |
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| Q |
273 |
aaaacatcacaaataaataatgggttgggaaccaaaaaatttagagtcaaatacaggtagtaatatcaatttcta |
347 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45371783 |
aaaacatcaca-------gattggttgggaaccaaaaaatttagagtcaaatacaggtataaatatcaatttcta |
45371716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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