View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_40 (Length: 366)
Name: NF11036_low_40
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 38791911 - 38792248
Alignment:
| Q |
22 |
tactctcagggaagattcttttgtttgctcttcttgttgcttcataaatgaatttctcacagtttttagctccaattcttataaactcttcgacaagcgc |
121 |
Q |
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| T |
38791911 |
tactctcaggaaagattcttttggttgctcttcttgttgcttcatggaggaatttctcacagttcttagctccaattcttataaactctttgacaagtgc |
38792010 |
T |
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| Q |
122 |
t-caatatgtccagctaatgaaatcttgagcagccctaagcaacctttgatgtgtattctttctgcgcagcttccgtcaaactcatcaacatcattttcc |
220 |
Q |
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| T |
38792011 |
ttccatatgtccagttaaagaaatcttcagcagctgtaagcaacctttgatatgtattctttttgcacagcattcgtcaaactcatcaacatcattttcc |
38792110 |
T |
|
| Q |
221 |
atgtatgcattattgcatgcaaccataatatcatgagcacgactgacgaaataccccnnnnnnnngtcctcaaaattctgaaaccaaaaataactcttaa |
320 |
Q |
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| T |
38792111 |
atgtatgcattattgcatgcaaccataatatcatgagcacggctgacgaaatgctccacaacaaagtcctcgaaattctgaaaccaaaaataactcttaa |
38792210 |
T |
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| Q |
321 |
aacagttcaattttaaacctcaaaaagggataaacaca |
358 |
Q |
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| T |
38792211 |
aacagttcaattttaaacctcaaaaagggataaacaca |
38792248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 52474896 - 52474838
Alignment:
| Q |
64 |
cataaatgaatttctcacagtttttagctccaattcttataaactcttcgacaagcgct |
122 |
Q |
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| T |
52474896 |
cataaaggaatttctcacactccttagctccaaatcttataaactctttgacaagcgct |
52474838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 4519890 - 4519926
Alignment:
| Q |
286 |
gtcctcaaaattctgaaaccaaaaataactcttaaaa |
322 |
Q |
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| T |
4519890 |
gtcctcaaaattctaaaaccaaaaataacacttaaaa |
4519926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 5838358 - 5838392
Alignment:
| Q |
287 |
tcctcaaaattctgaaaccaaaaataactcttaaa |
321 |
Q |
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| T |
5838358 |
tcctcaaaattctgaaaccaaaaataacacttaaa |
5838392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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