View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_41 (Length: 364)
Name: NF11036_low_41
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 5176579 - 5176245
Alignment:
| Q |
12 |
agagaagaaagccctgaaaacatgacaagcttaccaatgctctttggaatgacttcaacaacatcaataatgtcttcattttctttgcctcagatgccac |
111 |
Q |
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| T |
5176579 |
agagaagaaagccctgaaaacatgacaagcttaccaatgctctttggaatgacttcaacaacatcaataatgtcttcattttctttgcctcagatgccac |
5176480 |
T |
|
| Q |
112 |
tgtctgtttttgctgcgtggaccgatgcataatcaattttgtttcatacggatttggattaggcgtagtaacttcatcacgcagtttttcctgatataga |
211 |
Q |
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| T |
5176479 |
tgtctgtttttgctgcgtggaccgatgcataatcagttttgtttcgtacggatttggattaggcgtagtaacttcatcacgcagtttttcctgatataga |
5176380 |
T |
|
| Q |
212 |
cttaacgaacgagacagttttaaactgattttgttatagtgtaatatgaaccgtctgatctccttattttgcatgcatttttaggaagacagaattttaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5176379 |
cttaacgaacgagacagttttaaactgattttgttatagtgtaatatgaaccgtctgatctccttattttgcatgcatttttaggaagacagaattttaa |
5176280 |
T |
|
| Q |
312 |
tttagtcctattaatccttttaattatatagtgtt |
346 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
5176279 |
tttaatcctattaatccttttaattatatagtgtt |
5176245 |
T |
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