View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11036_low_44 (Length: 343)

Name: NF11036_low_44
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11036_low_44
NF11036_low_44
[»] chr6 (4 HSPs)
chr6 (82-331)||(2698107-2698355)
chr6 (19-77)||(2697942-2698000)
chr6 (150-208)||(8030814-8030873)
chr6 (150-212)||(10324477-10324542)
[»] chr8 (3 HSPs)
chr8 (139-212)||(32404606-32404680)
chr8 (158-209)||(45197135-45197187)
chr8 (132-209)||(32286062-32286140)
[»] chr1 (5 HSPs)
chr1 (134-212)||(42915800-42915878)
chr1 (149-202)||(47296020-47296074)
chr1 (149-204)||(13580034-13580090)
chr1 (138-204)||(5198639-5198706)
chr1 (149-212)||(19940583-19940646)
[»] chr5 (2 HSPs)
chr5 (132-212)||(38353628-38353709)
chr5 (151-195)||(9992553-9992598)
[»] chr4 (5 HSPs)
chr4 (150-212)||(34360917-34360980)
chr4 (132-212)||(34650819-34650901)
chr4 (132-212)||(24355770-24355851)
chr4 (168-208)||(19655279-19655319)
chr4 (168-208)||(55291336-55291376)
[»] chr2 (2 HSPs)
chr2 (150-212)||(34353309-34353372)
chr2 (168-212)||(15354366-15354409)
[»] chr3 (2 HSPs)
chr3 (132-212)||(26141686-26141767)
chr3 (149-224)||(36563088-36563162)
[»] chr7 (1 HSPs)
chr7 (149-212)||(37720538-37720601)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 82 - 331
Target Start/End: Original strand, 2698107 - 2698355
Alignment:
Q  82 aaggggtaaataatataataaatataaggaaaatgttaactagaagaatagcatttgaagttgtggagtcaactcctcaaaagtttaaaaatgttatttt 181  Q
    ||||||||||||| |  ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  2698107 aaggggtaaataacaagataaatataaggaaaatgttaaccagtagaatagtatttgaagttgtggagtcaactcttcaaaagtctaaaaatgttatttt 2698206  T
Q  182 caacttaaaactttcttattttagtttcctttgaccagtgcccaaacaaattatgaagtgaacaaaatcggtcaccacgagtacaatccaacgggtccca 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  2698207 caacttaaaactttcttattttagtttcctttgaccagtgcccaaacaaattatgaagtgaacaaactcagtcaccacgagtacaatccaacgggtccca 2698306  T
Q  282 acttgtggcacgaacccaaattgcaaaagaaattggtgtataagtattca 331  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2698307 acttgtggcacgaaccc-aattgcaaaagaaattggtgtatgagtattca 2698355  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 2697942 - 2698000
Alignment:
Q  19 ataagttcaagtaattattccctttttcatttctcaatttcttcaactaggtttttcct 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2697942 ataagttcaagtaattattccctttttcatttctcaatttcttcaactaggtttttcct 2698000  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 8030873 - 8030814
Alignment:
Q  150 tcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagttt 208  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||| |||| ||||    
T  8030873 tcaacttctcaaaagtttaaaaagtgctattttcaacttaaaactttctttttttggttt 8030814  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 10324477 - 10324542
Alignment:
Q  150 tcaactcctcaaaagtttaaaaa---tgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    |||||||||||||||| ||||||   |  ||||||||||||||||||||||| |||| ||||||||    
T  10324477 tcaactcctcaaaagtctaaaaaaaatagtattttcaacttaaaactttctttttttggtttcctt 10324542  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 32404680 - 32404606
Alignment:
Q  139 aagttgtggagtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  32404680 aagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaactttcttattttggcttcctt 32404606  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 45197187 - 45197135
Alignment:
Q  158 tcaaaagtttaaaaatgt-tattttcaacttaaaactttcttattttagtttc 209  Q
    ||||||||||||||||   ||||||||||||||||||||||| ||||||||||    
T  45197187 tcaaaagtttaaaaattaatattttcaacttaaaactttctttttttagtttc 45197135  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 32286062 - 32286140
Alignment:
Q  132 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttc 209  Q
    ||||| ||| ||||| | |||||| ||||||||| |||||| || |||||||||| |||||||||||| |||| |||||    
T  32286062 gcattggaacttgtgcattcaacttctcaaaagtataaaaagtgatattttcaacctaaaactttctttttttggtttc 32286140  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 42915800 - 42915878
Alignment:
Q  134 atttgaagttgtggagtcaactcctcaaaagtttaaaaatgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||||||||| || |||||||||||||||||| | ||||||    
T  42915800 atttgaagttgtgcagtcaactcatcaaaagtctaaaagtgttatttttaaattaaaactttcttattttggcttcctt 42915878  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 47296020 - 47296074
Alignment:
Q  149 gtcaactcctcaaaagtttaaaa-atgttattttcaacttaaaactttcttattt 202  Q
    ||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  47296020 gtcaaatcctcaaaagtataaaaaatgttattttcaacttcaaactttcttattt 47296074  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 13580034 - 13580090
Alignment:
Q  149 gtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttatttta 204  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||||| || |||||    
T  13580034 gtcaactcctcgatagtttaaaaagtgttattttcaacttaaaactttattgtttta 13580090  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 5198706 - 5198639
Alignment:
Q  138 gaagttgtggagtcaactcctcaaaagttta-aaaatgttattttcaacttaaaactttcttatttta 204  Q
    ||||||| | ||||||||| ||||||||||| ||||| ||||||| ||||||||||||| || |||||    
T  5198706 gaagttgcgcagtcaactcgtcaaaagtttaaaaaatattatttttaacttaaaactttattgtttta 5198639  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 19940646 - 19940583
Alignment:
Q  149 gtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||||||||||||||  |||||| |||||||||||  ||||||||||| | |||||||||||||    
T  19940646 gtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttcct-ttttagtttcctt 19940583  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 38353709 - 38353628
Alignment:
Q  132 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||| ||| ||||| | |||||||||||||||| |||||| || ||||||||||||||||||||||| ||||| |||||||    
T  38353709 gcattggaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttctttttttaatttcctt 38353628  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 9992598 - 9992553
Alignment:
Q  151 caactcctcaaaagtttaaaaa-tgttattttcaacttaaaacttt 195  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||    
T  9992598 caactcttcaaaagtttaaaaagtggtattttcaacttaaaacttt 9992553  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 34360917 - 34360980
Alignment:
Q  150 tcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||||| |||| ||||||||    
T  34360917 tcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttcttttttttgtttcctt 34360980  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 34650901 - 34650819
Alignment:
Q  132 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaa-tgt-tattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||| ||| ||||| | ||||||||||||||||||||||| ||  |||||||||||||||||||| || |||| ||||||||    
T  34650901 gcattggaatttgtgcattcaactcctcaaaagtttaaaaaatgagtattttcaacttaaaacttttttttttttgtttcctt 34650819  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 24355851 - 24355770
Alignment:
Q  132 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaatgt-tattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||| ||| ||||| | |||||||||||||||| ||||||  | ||||||||||||||||||||||  |||| ||||||||    
T  24355851 gcattggaacttgtgcattcaactcctcaaaagtctaaaaaattgtattttcaacttaaaactttctctttttggtttcctt 24355770  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 19655279 - 19655319
Alignment:
Q  168 aaaaatgttattttcaacttaaaactttcttattttagttt 208  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  19655279 aaaaatggtattttcaacttaaaactttcttgttttagttt 19655319  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 55291336 - 55291376
Alignment:
Q  168 aaaaatgttattttcaacttaaaactttcttattttagttt 208  Q
    ||||||| |||||||||| |||||||||||| |||||||||    
T  55291336 aaaaatgatattttcaacctaaaactttctttttttagttt 55291376  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 34353309 - 34353372
Alignment:
Q  150 tcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||||||||||||||||||||| || |||||||||||||||| |||||| |||| ||||||||    
T  34353309 tcaactcctcaaaagtttaaaaagtggtattttcaacttaaaattttctttttttggtttcctt 34353372  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 15354409 - 15354366
Alignment:
Q  168 aaaaatgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||||| |||||||||| |||||||||||| |||||||||||||    
T  15354409 aaaaatgatattttcaacctaaaactttctt-ttttagtttcctt 15354366  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 26141767 - 26141686
Alignment:
Q  132 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||| ||| ||||| | |||||||||||||| | |||||| || |||||||||||| |||||||||| ||||  |||||||    
T  26141767 gcattggaacttgtgcattcaactcctcaaaaatctaaaaaatggtattttcaactttaaactttctttttttgatttcctt 26141686  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 36563088 - 36563162
Alignment:
Q  149 gtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctttgaccagtgccc 224  Q
    ||||||||||||||||  |||||| |||||||||||  ||||||||||| | ||||||||| |||| ||||||||||    
T  36563088 gtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttcct-ttttagttt-ctttaaccagtgccc 36563162  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 37720601 - 37720538
Alignment:
Q  149 gtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 212  Q
    ||||||||||||||||  |||||| |||||||||||  ||||||||||| | |||||||||||||    
T  37720601 gtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttcct-ttttagtttcctt 37720538  T

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