View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_45 (Length: 336)
Name: NF11036_low_45
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 50 - 319
Target Start/End: Complemental strand, 47707694 - 47707397
Alignment:
| Q |
50 |
aagtgaactaaatagagcagctgatagtagagattcctcggtgaatttcttcggcacaaccatgccgcaaacacagacattcttgttcaatgtttcatgt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47707694 |
aagtgaactaaatagagcagctgatagtagagattcctcggtgaatttcttcggcacaaccacgccgcaaacacagacattcttgttcaatgtttcatgt |
47707595 |
T |
|
| Q |
150 |
gtcacacagactgatatataatcaaaaggagtaattaattc--------------------gtctcttgaggttataaagtcaaattctaaccaattttt |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47707594 |
gtcacacagactgatacataatcaaaaggagtaattaattcgtcttagagattataaattcgtctcttgaggttataaagtcaaattctaaccaattttt |
47707495 |
T |
|
| Q |
230 |
taatttaacaaatgcag-------nnnnnnnnnctattcttagattatgaaaatgtaaaagaactaaact-acttaatttaccttcttctatacatct |
319 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47707494 |
taatttaacaaatgcagaaaagaaaaaaaaaaactattcttagattatgaaaatgcaaaagaactaaactaacttaatttaccttcttctatacatct |
47707397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 47707796 - 47707746
Alignment:
| Q |
2 |
cttgtgcaacacccgtttagatttcatcacatgagaaacatcatgcccaag |
52 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47707796 |
cttgtgcaacacccttttagatttcatcacatgagaaacatcatgcccaag |
47707746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University