View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11036_low_46 (Length: 332)
Name: NF11036_low_46
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_46 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 93 - 317
Target Start/End: Complemental strand, 396 - 173
Alignment:
| Q |
93 |
ccaacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatt |
192 |
Q |
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|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
396 |
ccaacttgtgcatttgagcatagtcgcataatttgcaattcatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatt |
297 |
T |
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| Q |
193 |
aagtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaatattcttttatattcacnnnnnnnnatcgatgttattttgcaagaga |
292 |
Q |
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| T |
296 |
aagtatagtaggctatcttaatattgcaaaaaagtagtgcctgcgttccaaaatattcttttatattca-ttttttttatccatgttattttgcaagaga |
198 |
T |
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| Q |
293 |
ctatctctttctcctagcttcaaag |
317 |
Q |
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|||| ||||||||| | |||||||| |
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| T |
197 |
ctatttctttctccaaacttcaaag |
173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 317
Target Start/End: Complemental strand, 6242208 - 6241991
Alignment:
| Q |
94 |
caacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatta |
193 |
Q |
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| T |
6242208 |
caacttgttcatttgagcatagtcacataatttgcaattcatgttgatcacgtatggacggattcgcggtacgcaatatgagaa-------acccggtta |
6242116 |
T |
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| Q |
194 |
agtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaatattcttttatattcac-nnnnnnnnatcgatgttattttgcaagaga |
292 |
Q |
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| T |
6242115 |
agtatagtagactaacttaatattgcaaaaaagtagtgcccacgtttcaaaatattcttttacattcactttttttttatcgttattattttgcaagaga |
6242016 |
T |
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| Q |
293 |
ctatctctttctcctagcttcaaag |
317 |
Q |
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| T |
6242015 |
ctatctctttctccaaacttcaaag |
6241991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 10850715 - 10850754
Alignment:
| Q |
190 |
attaagtatagtaggctatcttaatattgcaaaaaagtag |
229 |
Q |
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| T |
10850715 |
attaagtatagtaagctatcttaatattgcaaaaaggtag |
10850754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 10878229 - 10878268
Alignment:
| Q |
190 |
attaagtatagtaggctatcttaatattgcaaaaaagtag |
229 |
Q |
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| T |
10878229 |
attaagtatagtaagctatcttaatattgcaaaaaggtag |
10878268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 16724148 - 16724110
Alignment:
| Q |
190 |
attaagtatagtaggctatcttaatattgcaaaaaagta |
228 |
Q |
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| T |
16724148 |
attaagtatagtaaactatcttaatattgcaaaaaagta |
16724110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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