View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11036_low_52 (Length: 299)
Name: NF11036_low_52
Description: NF11036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11036_low_52 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 43606823 - 43606541
Alignment:
| Q |
1 |
tcctagaagcaatcttcaccaccgatttcctcaaatactcatcatcgactttcgaccttaacccaaaacacacaaccatctgcaaaaacatcaccatttc |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606823 |
tcctagaagcaaacttcatcaccgatttcctcaaatactcatcatcgactttcgaccttaacccaaaacacacaaccatctgcaaaaacatcaccatttc |
43606724 |
T |
|
| Q |
101 |
agcagcacctttctccggttccccatcaagctgttccttccacaaatccaaaagactcccagctctctccacaatcgttcttgaatacacactcgactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606723 |
agcagcacctttctccggttccccatcaagctgctccttccacaaatccaaaagactcccagctctctccacaatcgttcttgaatacacactcgactcc |
43606624 |
T |
|
| Q |
201 |
gaaatcaacccttgaatcaaaagcccacaggcccatctcttatcagtaacaccagacttcccctctgttttacacgtcagata |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606623 |
gaaatcaacccttgaatcaaaagcccacaggcccatctcttatcagtaacaccagacttcccctctgttttacacgtcagata |
43606541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 35750408 - 35750490
Alignment:
| Q |
87 |
aacatcaccatttcagcagcacctttctccggttccccatcaagctgttccttccacaaatccaaaagactcccagctctctc |
169 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||| | ||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35750408 |
aacatcaccatttcggtagcacccttctccggttctcgatccaattgttccttccacaaatccaaaagactcccagctttctc |
35750490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University